Results 41 - 60 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 3' | -58.8 | NC_005261.1 | + | 94337 | 0.66 | 0.738815 |
Target: 5'- -uCGCGCcGGuAGGCGUCGAUcguccggcacacaGCGCa -3' miRNA: 3'- cuGUGCGuCCuUCCGCGGCUA-------------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 73056 | 0.66 | 0.75711 |
Target: 5'- -cCGCGCcuAGGAAGGCGCacguguucgccaGGaGCGCg -3' miRNA: 3'- cuGUGCG--UCCUUCCGCGg-----------CUaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 100640 | 0.66 | 0.768464 |
Target: 5'- aGGCGCGCGGccc-GCGCCGcaacgGCGCg -3' miRNA: 3'- -CUGUGCGUCcuucCGCGGCua---CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 107744 | 0.66 | 0.749451 |
Target: 5'- cGGC-CGCGGGggGGgccaCGCCccaGCGCUc -3' miRNA: 3'- -CUGuGCGUCCuuCC----GCGGcuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 98292 | 0.66 | 0.764698 |
Target: 5'- cGGCGCGUccgcggccucGGGGgcGGGCGCCGccgccagcggcgGCGCg -3' miRNA: 3'- -CUGUGCG----------UCCU--UCCGCGGCua----------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 53324 | 0.66 | 0.730029 |
Target: 5'- aGGC-CGCAGGuguGCGCCucUGCGCc -3' miRNA: 3'- -CUGuGCGUCCuucCGCGGcuACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 39784 | 0.66 | 0.730029 |
Target: 5'- gGACGuCGCcGGggGGCGgCGcgGcCGCc -3' miRNA: 3'- -CUGU-GCGuCCuuCCGCgGCuaC-GCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 2148 | 0.66 | 0.749451 |
Target: 5'- cGGCGCGCccguccAGGAcccggcccAGGCGUgCGAgucgGCGCUc -3' miRNA: 3'- -CUGUGCG------UCCU--------UCCGCG-GCUa---CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 86212 | 0.67 | 0.690247 |
Target: 5'- cGGCGCGCc-GAaccgGGGCaGCCGGUGcCGCa -3' miRNA: 3'- -CUGUGCGucCU----UCCG-CGGCUAC-GCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 28561 | 0.67 | 0.71027 |
Target: 5'- cGACGCGgcccgcCGGGccGAGGCGCgCGA-GCGCc -3' miRNA: 3'- -CUGUGC------GUCC--UUCCGCG-GCUaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 121048 | 0.67 | 0.71027 |
Target: 5'- cACACGUcgcGGuuguGGCGCgCGGUGUGCg -3' miRNA: 3'- cUGUGCGu--CCuu--CCGCG-GCUACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 115148 | 0.67 | 0.720187 |
Target: 5'- uACACGagcCGGGGgucGGGCGCCuccUGCGCg -3' miRNA: 3'- cUGUGC---GUCCU---UCCGCGGcu-ACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 31464 | 0.67 | 0.71027 |
Target: 5'- aGCGCcgGCGGccuGAGuGGcCGCCGGUGCGCg -3' miRNA: 3'- cUGUG--CGUC---CUU-CC-GCGGCUACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 90195 | 0.67 | 0.719198 |
Target: 5'- --gACGCAGGGagcgcggGGGCGgCGGaGCGCc -3' miRNA: 3'- cugUGCGUCCU-------UCCGCgGCUaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 135210 | 0.67 | 0.700287 |
Target: 5'- aGGCgGCGCA-GAGGGCcacgGCCGA-GCGCg -3' miRNA: 3'- -CUG-UGCGUcCUUCCG----CGGCUaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 23174 | 0.67 | 0.71027 |
Target: 5'- aGGCGCGCcGGggGcgacagcgagcGCGCCGcgGgGCc -3' miRNA: 3'- -CUGUGCGuCCuuC-----------CGCGGCuaCgCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 2644 | 0.67 | 0.71027 |
Target: 5'- aGCACGCGGGcGGGCagcggcggcucCCGccGCGCUg -3' miRNA: 3'- cUGUGCGUCCuUCCGc----------GGCuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 29461 | 0.67 | 0.719198 |
Target: 5'- gGGgACGCGGGGAagcaguacgcGGCGCUGGUggaccugguguacGCGCg -3' miRNA: 3'- -CUgUGCGUCCUU----------CCGCGGCUA-------------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 5488 | 0.67 | 0.719198 |
Target: 5'- cGCGCGCcGGggGGUagcugggGCCGcgGCaGCg -3' miRNA: 3'- cUGUGCGuCCuuCCG-------CGGCuaCG-CGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 3722 | 0.67 | 0.71027 |
Target: 5'- aGACGCGCcgcugccGGAc-GCGCCGGcgGCGCa -3' miRNA: 3'- -CUGUGCGu------CCUucCGCGGCUa-CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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