miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 31464 0.67 0.71027
Target:  5'- aGCGCcgGCGGccuGAGuGGcCGCCGGUGCGCg -3'
miRNA:   3'- cUGUG--CGUC---CUU-CC-GCGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 23174 0.67 0.71027
Target:  5'- aGGCGCGCcGGggGcgacagcgagcGCGCCGcgGgGCc -3'
miRNA:   3'- -CUGUGCGuCCuuC-----------CGCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 135210 0.67 0.700287
Target:  5'- aGGCgGCGCA-GAGGGCcacgGCCGA-GCGCg -3'
miRNA:   3'- -CUG-UGCGUcCUUCCG----CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 137036 0.68 0.629303
Target:  5'- cGGCGuCGguGGAGGGCGgaCCGucggcagGCGCg -3'
miRNA:   3'- -CUGU-GCguCCUUCCGC--GGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 34930 0.68 0.629303
Target:  5'- -cCACGCGGG-GGGCGgCCG--GCGCg -3'
miRNA:   3'- cuGUGCGUCCuUCCGC-GGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 30706 0.68 0.629303
Target:  5'- aGGCcCGCGGGAGccccGGCGCCGGgcCGCc -3'
miRNA:   3'- -CUGuGCGUCCUU----CCGCGGCUacGCGa -5'
23794 3' -58.8 NC_005261.1 + 38536 0.68 0.619105
Target:  5'- cGCGCGCcGGGcacaGCGCCGgcGCGCg -3'
miRNA:   3'- cUGUGCGuCCUuc--CGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59857 0.68 0.626243
Target:  5'- cAUGCGCGGGAcgucggccucguacGGGUGCCGgcGgGCa -3'
miRNA:   3'- cUGUGCGUCCU--------------UCCGCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 107510 0.68 0.619105
Target:  5'- -cCACGCAGGcc-GCGCCGAagggcaGCGCg -3'
miRNA:   3'- cuGUGCGUCCuucCGCGGCUa-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 28756 0.68 0.608918
Target:  5'- gGACGcCGCGGccGggGGCGCCuGGgccgcgGCGCg -3'
miRNA:   3'- -CUGU-GCGUC--CuuCCGCGG-CUa-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 83680 0.68 0.639502
Target:  5'- gGGCGCGCAGcgcgccgccgaGgcGGCGCCGcagccaGCGCa -3'
miRNA:   3'- -CUGUGCGUC-----------CuuCCGCGGCua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118662 0.68 0.639502
Target:  5'- cGCGCGCucGGGGcugaGGGCGgCGG-GCGCUg -3'
miRNA:   3'- cUGUGCG--UCCU----UCCGCgGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 121674 0.68 0.649695
Target:  5'- --gGCGUAGGuguAGGCGCCcuccagguUGCGCa -3'
miRNA:   3'- cugUGCGUCCu--UCCGCGGcu------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 66600 0.68 0.658858
Target:  5'- uGCGCGCGagcugcuGGAuGGCGCgCG-UGCGCa -3'
miRNA:   3'- cUGUGCGU-------CCUuCCGCG-GCuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 34352 0.68 0.629303
Target:  5'- cGGC-CGaCGGGGccGGGCGCCGcgcgGCGCc -3'
miRNA:   3'- -CUGuGC-GUCCU--UCCGCGGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 71420 0.68 0.659875
Target:  5'- --gGCGCGGGGcccggcccGGGC-CCGcgGCGCg -3'
miRNA:   3'- cugUGCGUCCU--------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 77263 0.68 0.659875
Target:  5'- gGGCGCGCucgcGGgcGGCGUCugcauUGCGCUu -3'
miRNA:   3'- -CUGUGCGu---CCuuCCGCGGcu---ACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 43113 0.68 0.659875
Target:  5'- cGugGCGCGGGAuuGGcGCGCCuacacacGCGCg -3'
miRNA:   3'- -CugUGCGUCCU--UC-CGCGGcua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 105380 0.68 0.659875
Target:  5'- cGCGCGCGGGugcGCGCUGAccacGCGCc -3'
miRNA:   3'- cUGUGCGUCCuucCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 73740 0.68 0.656823
Target:  5'- uGCGCGCGGGGGuccGGUGCCacggccgcuucuacGAgGCGCUg -3'
miRNA:   3'- cUGUGCGUCCUU---CCGCGG--------------CUaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.