Results 101 - 120 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23794 | 3' | -58.8 | NC_005261.1 | + | 83680 | 0.68 | 0.639502 |
Target: 5'- gGGCGCGCAGcgcgccgccgaGgcGGCGCCGcagccaGCGCa -3' miRNA: 3'- -CUGUGCGUC-----------CuuCCGCGGCua----CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 98196 | 0.68 | 0.619105 |
Target: 5'- gGGCGCgGCGGGcagcGGGCGCCGccacggcaGCGCg -3' miRNA: 3'- -CUGUG-CGUCCu---UCCGCGGCua------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 134208 | 0.68 | 0.608918 |
Target: 5'- cGGCGCGCGGGucgcGGCGgCCGGcaGCGUc -3' miRNA: 3'- -CUGUGCGUCCuu--CCGC-GGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 105380 | 0.68 | 0.659875 |
Target: 5'- cGCGCGCGGGugcGCGCUGAccacGCGCc -3' miRNA: 3'- cUGUGCGUCCuucCGCGGCUa---CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 43113 | 0.68 | 0.659875 |
Target: 5'- cGugGCGCGGGAuuGGcGCGCCuacacacGCGCg -3' miRNA: 3'- -CugUGCGUCCU--UC-CGCGGcua----CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 77263 | 0.68 | 0.659875 |
Target: 5'- gGGCGCGCucgcGGgcGGCGUCugcauUGCGCUu -3' miRNA: 3'- -CUGUGCGu---CCuuCCGCGGcu---ACGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 71420 | 0.68 | 0.659875 |
Target: 5'- --gGCGCGGGGcccggcccGGGC-CCGcgGCGCg -3' miRNA: 3'- cugUGCGUCCU--------UCCGcGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 134971 | 0.68 | 0.649695 |
Target: 5'- cGACGCagacgGCgAGGAcgGGGcCGCCGggGCGCc -3' miRNA: 3'- -CUGUG-----CG-UCCU--UCC-GCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 117914 | 0.68 | 0.649695 |
Target: 5'- cGGCuGCGCGGGAacgaAGGCcggcugcgGCCcGUGCGCg -3' miRNA: 3'- -CUG-UGCGUCCU----UCCG--------CGGcUACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 66600 | 0.68 | 0.658858 |
Target: 5'- uGCGCGCGagcugcuGGAuGGCGCgCG-UGCGCa -3' miRNA: 3'- cUGUGCGU-------CCUuCCGCG-GCuACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 73740 | 0.68 | 0.656823 |
Target: 5'- uGCGCGCGGGGGuccGGUGCCacggccgcuucuacGAgGCGCUg -3' miRNA: 3'- cUGUGCGUCCUU---CCGCGG--------------CUaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 49267 | 0.68 | 0.649695 |
Target: 5'- cGGCGCGCacguccgcgAGGAAGGCGCagaagcccgcggCGGUgaGCGCc -3' miRNA: 3'- -CUGUGCG---------UCCUUCCGCG------------GCUA--CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 121674 | 0.68 | 0.649695 |
Target: 5'- --gGCGUAGGuguAGGCGCCcuccagguUGCGCa -3' miRNA: 3'- cugUGCGUCCu--UCCGCGGcu------ACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 74048 | 0.68 | 0.649695 |
Target: 5'- aGCGCGCcGGggGGCuGCgGcagcUGCGCg -3' miRNA: 3'- cUGUGCGuCCuuCCG-CGgCu---ACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 51735 | 0.68 | 0.646638 |
Target: 5'- cGCACGCAGGcccccGGGCuGCCGcuggccgugaagcugGCGCUg -3' miRNA: 3'- cUGUGCGUCCu----UCCG-CGGCua-------------CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 28756 | 0.68 | 0.608918 |
Target: 5'- gGACGcCGCGGccGggGGCGCCuGGgccgcgGCGCg -3' miRNA: 3'- -CUGU-GCGUC--CuuCCGCGG-CUa-----CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 111598 | 0.68 | 0.608918 |
Target: 5'- aGCACGCGGaGuGGGCGCgGcUGgGCUg -3' miRNA: 3'- cUGUGCGUC-CuUCCGCGgCuACgCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 59080 | 0.68 | 0.639502 |
Target: 5'- cGCGCGCGGGu--GCGCCGcgcccucGCGCUc -3' miRNA: 3'- cUGUGCGUCCuucCGCGGCua-----CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 117465 | 0.69 | 0.598748 |
Target: 5'- uGCG-GCAGGucGGCGgCGAcGCGCUg -3' miRNA: 3'- cUGUgCGUCCuuCCGCgGCUaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 52250 | 0.69 | 0.598748 |
Target: 5'- ---uCGUGGGAGGGCGCUGuccGCGCc -3' miRNA: 3'- cuguGCGUCCUUCCGCGGCua-CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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