miRNA display CGI


Results 41 - 60 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 125342 0.71 0.452538
Target:  5'- aGCGCGCAGGGcguccagcAGGCuccGCCGGgcagagggGCGCUg -3'
miRNA:   3'- cUGUGCGUCCU--------UCCG---CGGCUa-------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 62518 0.71 0.452538
Target:  5'- ---cUGCAGGAAGGCGCC---GCGCg -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 30137 0.71 0.44707
Target:  5'- cGACGCGguGGAGcgcgcgcgccuuagcGGCGCCGcgcccgccGCGCUg -3'
miRNA:   3'- -CUGUGCguCCUU---------------CCGCGGCua------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 103869 0.71 0.443445
Target:  5'- cGGCG-GCGGGgcGGCGCCGccgggcgGCGCg -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 68594 0.71 0.443445
Target:  5'- gGGC-CGCGGGAGcGGgGCCGAcgGCGUg -3'
miRNA:   3'- -CUGuGCGUCCUU-CCgCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 13652 0.71 0.438038
Target:  5'- cGCGCGCcgugccgccgccgcgGGGggGGCGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCG---------------UCCuuCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74501 0.71 0.434455
Target:  5'- cGGCGCucuuCGGGgcGGCGCCGGggccaugGCGCUu -3'
miRNA:   3'- -CUGUGc---GUCCuuCCGCGGCUa------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 58796 0.71 0.434455
Target:  5'- cGCGCGCAGGAAGGCcgGCaCGcgccGCGCc -3'
miRNA:   3'- cUGUGCGUCCUUCCG--CG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 87887 0.7 0.509095
Target:  5'- aGAgGCGCGGaGAGGGCggGCCGG-GCGUa -3'
miRNA:   3'- -CUgUGCGUC-CUUCCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 131755 0.7 0.509095
Target:  5'- cGGCACGCcGGccGGCGCgGcggGCGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 126939 0.7 0.509095
Target:  5'- --aGCGCGGccaGGGGCGCCGG-GCGCg -3'
miRNA:   3'- cugUGCGUCc--UUCCGCGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 130633 0.7 0.509095
Target:  5'- aGCGCGCGGGgcGcGCgugcgcucGCCGAcGCGCUg -3'
miRNA:   3'- cUGUGCGUCCuuC-CG--------CGGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 74918 0.7 0.518817
Target:  5'- cGCGCGgGGGAGGGCGaggacggggaCUGcgGCGCg -3'
miRNA:   3'- cUGUGCgUCCUUCCGC----------GGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 52986 0.7 0.509095
Target:  5'- cGGCAgGCGGGGGcGGCGCCcagGCGUc -3'
miRNA:   3'- -CUGUgCGUCCUU-CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 32913 0.7 0.509095
Target:  5'- gGGCGCGCGuGGggGGCGgCGG-GCGg- -3'
miRNA:   3'- -CUGUGCGU-CCuuCCGCgGCUaCGCga -5'
23794 3' -58.8 NC_005261.1 + 102463 0.7 0.503299
Target:  5'- cGGCGCGCAGGcgccggaccuccucGGcGCGCCGccGCGCc -3'
miRNA:   3'- -CUGUGCGUCCu-------------UC-CGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 50640 0.7 0.49945
Target:  5'- gGGCG-GCGGGguGGCGCCGGcgaacGCGCUc -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCUa----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 134365 0.7 0.49945
Target:  5'- cGCGCGgGGGgcGGCGCCGcugGCGaCg -3'
miRNA:   3'- cUGUGCgUCCuuCCGCGGCua-CGC-Ga -5'
23794 3' -58.8 NC_005261.1 + 81360 0.7 0.49945
Target:  5'- gGGCuuGCGGG-GGGCGCCGGgcuCGCUg -3'
miRNA:   3'- -CUGugCGUCCuUCCGCGGCUac-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 15780 0.7 0.528612
Target:  5'- aGGC-CGCuGGcGGGCGCCGcccGCGCg -3'
miRNA:   3'- -CUGuGCGuCCuUCCGCGGCua-CGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.