miRNA display CGI


Results 61 - 80 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 81360 0.7 0.49945
Target:  5'- gGGCuuGCGGG-GGGCGCCGGgcuCGCUg -3'
miRNA:   3'- -CUGugCGUCCuUCCGCGGCUac-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 134365 0.7 0.49945
Target:  5'- cGCGCGgGGGgcGGCGCCGcugGCGaCg -3'
miRNA:   3'- cUGUGCgUCCuuCCGCGGCua-CGC-Ga -5'
23794 3' -58.8 NC_005261.1 + 50640 0.7 0.49945
Target:  5'- gGGCG-GCGGGguGGCGCCGGcgaacGCGCUc -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCUa----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 102463 0.7 0.503299
Target:  5'- cGGCGCGCAGGcgccggaccuccucGGcGCGCCGccGCGCc -3'
miRNA:   3'- -CUGUGCGUCCu-------------UC-CGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 32913 0.7 0.509095
Target:  5'- gGGCGCGCGuGGggGGCGgCGG-GCGg- -3'
miRNA:   3'- -CUGUGCGU-CCuuCCGCgGCUaCGCga -5'
23794 3' -58.8 NC_005261.1 + 52986 0.7 0.509095
Target:  5'- cGGCAgGCGGGGGcGGCGCCcagGCGUc -3'
miRNA:   3'- -CUGUgCGUCCUU-CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 87887 0.7 0.509095
Target:  5'- aGAgGCGCGGaGAGGGCggGCCGG-GCGUa -3'
miRNA:   3'- -CUgUGCGUC-CUUCCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 97740 0.69 0.55838
Target:  5'- cGGCugGCAGGGgcgGGGCGggcUCGGcgGCGCg -3'
miRNA:   3'- -CUGugCGUCCU---UCCGC---GGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118379 0.69 0.55838
Target:  5'- gGGCGCGCGGcccGAGGCGCUGGcgGcCGCg -3'
miRNA:   3'- -CUGUGCGUCc--UUCCGCGGCUa-C-GCGa -5'
23794 3' -58.8 NC_005261.1 + 127777 0.69 0.562387
Target:  5'- aGACGCccggcugcucgagcgGCGGGccGGCGCCGcgGCGg- -3'
miRNA:   3'- -CUGUG---------------CGUCCuuCCGCGGCuaCGCga -5'
23794 3' -58.8 NC_005261.1 + 11103 0.69 0.568411
Target:  5'- gGACGCGaCGGGAcgAGauGCGCCGGcagcgUGCGCc -3'
miRNA:   3'- -CUGUGC-GUCCU--UC--CGCGGCU-----ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 55279 0.69 0.568411
Target:  5'- uGGCGCGCcGGAggcggGGGCGCUGAagagccgGUGCg -3'
miRNA:   3'- -CUGUGCGuCCU-----UCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 76448 0.69 0.55838
Target:  5'- gGACGCGCccgacGGcGAcggcGGCGCCGgcGCGCg -3'
miRNA:   3'- -CUGUGCG-----UC-CUu---CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 71021 0.69 0.55838
Target:  5'- -cCGCGCAGGAAGGCGUCGuagagGUcCg -3'
miRNA:   3'- cuGUGCGUCCUUCCGCGGCua---CGcGa -5'
23794 3' -58.8 NC_005261.1 + 56392 0.69 0.55838
Target:  5'- aGCuCGCGGGGgcccuGGGCGCCc-UGCGCUu -3'
miRNA:   3'- cUGuGCGUCCU-----UCCGCGGcuACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 33593 0.69 0.55838
Target:  5'- aGCAC-CAGGGGcGGCGCCG--GCGCg -3'
miRNA:   3'- cUGUGcGUCCUU-CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 5799 0.69 0.55838
Target:  5'- aGAuCGCGaggaAGGAAgcucggcagcGGCgGCCGAUGCGCg -3'
miRNA:   3'- -CU-GUGCg---UCCUU----------CCG-CGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 136556 0.69 0.548399
Target:  5'- aGCugGUGGGGgcagaAGGCGCgGGUGgGCg -3'
miRNA:   3'- cUGugCGUCCU-----UCCGCGgCUACgCGa -5'
23794 3' -58.8 NC_005261.1 + 105754 0.69 0.548399
Target:  5'- cGCGCGCGGGGaccuGGGUGCUcaggGCGCg -3'
miRNA:   3'- cUGUGCGUCCU----UCCGCGGcua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74118 0.69 0.568411
Target:  5'- gGACcCGguGGuccuGGCGCCGGUGCu-- -3'
miRNA:   3'- -CUGuGCguCCuu--CCGCGGCUACGcga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.