miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 52250 0.69 0.598748
Target:  5'- ---uCGUGGGAGGGCGCUGuccGCGCc -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 95763 0.69 0.598748
Target:  5'- gGGgGCGCcGGGAGccucgcgcgcuGCGCCGgcGCGCUg -3'
miRNA:   3'- -CUgUGCGuCCUUC-----------CGCGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 123884 0.69 0.568411
Target:  5'- uGGCGCGCAcuucgcGGAAGGcCGCCGcUGUGg- -3'
miRNA:   3'- -CUGUGCGU------CCUUCC-GCGGCuACGCga -5'
23794 3' -58.8 NC_005261.1 + 88801 0.69 0.568411
Target:  5'- cGCGCaGCAGGAcgccggcggcgGGGCGgCGgcGCGCg -3'
miRNA:   3'- cUGUG-CGUCCU-----------UCCGCgGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 101251 0.69 0.548399
Target:  5'- -uCGCGCAGc---GCGUCGAUGCGCUc -3'
miRNA:   3'- cuGUGCGUCcuucCGCGGCUACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 105754 0.69 0.548399
Target:  5'- cGCGCGCGGGGaccuGGGUGCUcaggGCGCg -3'
miRNA:   3'- cUGUGCGUCCU----UCCGCGGcua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 136556 0.69 0.548399
Target:  5'- aGCugGUGGGGgcagaAGGCGCgGGUGgGCg -3'
miRNA:   3'- cUGugCGUCCU-----UCCGCGgCUACgCGa -5'
23794 3' -58.8 NC_005261.1 + 5799 0.69 0.55838
Target:  5'- aGAuCGCGaggaAGGAAgcucggcagcGGCgGCCGAUGCGCg -3'
miRNA:   3'- -CU-GUGCg---UCCUU----------CCG-CGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 33593 0.69 0.55838
Target:  5'- aGCAC-CAGGGGcGGCGCCG--GCGCg -3'
miRNA:   3'- cUGUGcGUCCUU-CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 56392 0.69 0.55838
Target:  5'- aGCuCGCGGGGgcccuGGGCGCCc-UGCGCUu -3'
miRNA:   3'- cUGuGCGUCCU-----UCCGCGGcuACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 71021 0.69 0.55838
Target:  5'- -cCGCGCAGGAAGGCGUCGuagagGUcCg -3'
miRNA:   3'- cuGUGCGUCCUUCCGCGGCua---CGcGa -5'
23794 3' -58.8 NC_005261.1 + 76448 0.69 0.55838
Target:  5'- gGACGCGCccgacGGcGAcggcGGCGCCGgcGCGCg -3'
miRNA:   3'- -CUGUGCG-----UC-CUu---CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 97740 0.69 0.55838
Target:  5'- cGGCugGCAGGGgcgGGGCGggcUCGGcgGCGCg -3'
miRNA:   3'- -CUGugCGUCCU---UCCGC---GGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118379 0.69 0.55838
Target:  5'- gGGCGCGCGGcccGAGGCGCUGGcgGcCGCg -3'
miRNA:   3'- -CUGUGCGUCc--UUCCGCGGCUa-C-GCGa -5'
23794 3' -58.8 NC_005261.1 + 127777 0.69 0.562387
Target:  5'- aGACGCccggcugcucgagcgGCGGGccGGCGCCGcgGCGg- -3'
miRNA:   3'- -CUGUG---------------CGUCCuuCCGCGGCuaCGCga -5'
23794 3' -58.8 NC_005261.1 + 11103 0.69 0.568411
Target:  5'- gGACGCGaCGGGAcgAGauGCGCCGGcagcgUGCGCc -3'
miRNA:   3'- -CUGUGC-GUCCU--UC--CGCGGCU-----ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 55279 0.69 0.568411
Target:  5'- uGGCGCGCcGGAggcggGGGCGCUGAagagccgGUGCg -3'
miRNA:   3'- -CUGUGCGuCCU-----UCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74118 0.69 0.568411
Target:  5'- gGACcCGguGGuccuGGCGCCGGUGCu-- -3'
miRNA:   3'- -CUGuGCguCCuu--CCGCGGCUACGcga -5'
23794 3' -58.8 NC_005261.1 + 75834 0.69 0.568411
Target:  5'- -cCGCGCccGGGGAGGgGCgCGcgGCGCc -3'
miRNA:   3'- cuGUGCG--UCCUUCCgCG-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 111598 0.68 0.608918
Target:  5'- aGCACGCGGaGuGGGCGCgGcUGgGCUg -3'
miRNA:   3'- cUGUGCGUC-CuUCCGCGgCuACgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.