miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 34930 0.68 0.629303
Target:  5'- -cCACGCGGG-GGGCGgCCG--GCGCg -3'
miRNA:   3'- cuGUGCGUCCuUCCGC-GGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 34352 0.68 0.629303
Target:  5'- cGGC-CGaCGGGGccGGGCGCCGcgcgGCGCc -3'
miRNA:   3'- -CUGuGC-GUCCU--UCCGCGGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 137036 0.68 0.629303
Target:  5'- cGGCGuCGguGGAGGGCGgaCCGucggcagGCGCg -3'
miRNA:   3'- -CUGU-GCguCCUUCCGC--GGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118780 0.68 0.639502
Target:  5'- cGACGCuGCAGacGGcGCGCUGAUGgCGCa -3'
miRNA:   3'- -CUGUG-CGUCcuUC-CGCGGCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 131932 0.68 0.639502
Target:  5'- cGCGCGCGGGAccgcGGUGCCc--GCGCc -3'
miRNA:   3'- cUGUGCGUCCUu---CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 68735 0.68 0.639502
Target:  5'- gGGCGCcgGCGGGAAGaagcgccCGCCGggGCGCc -3'
miRNA:   3'- -CUGUG--CGUCCUUCc------GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74284 0.68 0.639502
Target:  5'- cGGCGgGCGGGgcGGuCGCCGccGgGCa -3'
miRNA:   3'- -CUGUgCGUCCuuCC-GCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 83680 0.68 0.639502
Target:  5'- gGGCGCGCAGcgcgccgccgaGgcGGCGCCGcagccaGCGCa -3'
miRNA:   3'- -CUGUGCGUC-----------CuuCCGCGGCua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 15525 0.68 0.629303
Target:  5'- uGCAgGCAGGAgcggaAGGCGUCGuucgcgacGCGCg -3'
miRNA:   3'- cUGUgCGUCCU-----UCCGCGGCua------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 107348 0.68 0.628282
Target:  5'- -cCGCGUugcGGAccugcgucgucguGGGCGCCGggGCGCc -3'
miRNA:   3'- cuGUGCGu--CCU-------------UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59857 0.68 0.626243
Target:  5'- cAUGCGCGGGAcgucggccucguacGGGUGCCGgcGgGCa -3'
miRNA:   3'- cUGUGCGUCCU--------------UCCGCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 111598 0.68 0.608918
Target:  5'- aGCACGCGGaGuGGGCGCgGcUGgGCUg -3'
miRNA:   3'- cUGUGCGUC-CuUCCGCGgCuACgCGA- -5'
23794 3' -58.8 NC_005261.1 + 134208 0.68 0.608918
Target:  5'- cGGCGCGCGGGucgcGGCGgCCGGcaGCGUc -3'
miRNA:   3'- -CUGUGCGUCCuu--CCGC-GGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 98196 0.68 0.619105
Target:  5'- gGGCGCgGCGGGcagcGGGCGCCGccacggcaGCGCg -3'
miRNA:   3'- -CUGUG-CGUCCu---UCCGCGGCua------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 62547 0.68 0.619105
Target:  5'- -cCACGCcGaGAGGCGCCGccagcAUGCGCc -3'
miRNA:   3'- cuGUGCGuCcUUCCGCGGC-----UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 107510 0.68 0.619105
Target:  5'- -cCACGCAGGcc-GCGCCGAagggcaGCGCg -3'
miRNA:   3'- cuGUGCGUCCuucCGCGGCUa-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 109879 0.68 0.619105
Target:  5'- gGGCcCGCGGGcGGGCGCCccgGgGCUa -3'
miRNA:   3'- -CUGuGCGUCCuUCCGCGGcuaCgCGA- -5'
23794 3' -58.8 NC_005261.1 + 29112 0.68 0.619105
Target:  5'- cGACGCcgaGGGGAgcccuGGCGCCGGgggGCGCc -3'
miRNA:   3'- -CUGUGcg-UCCUU-----CCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 38536 0.68 0.619105
Target:  5'- cGCGCGCcGGGcacaGCGCCGgcGCGCg -3'
miRNA:   3'- cUGUGCGuCCUuc--CGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 118662 0.68 0.639502
Target:  5'- cGCGCGCucGGGGcugaGGGCGgCGG-GCGCUg -3'
miRNA:   3'- cUGUGCG--UCCU----UCCGCgGCUaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.