Results 121 - 140 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23794 | 3' | -58.8 | NC_005261.1 | + | 134208 | 0.68 | 0.608918 |
Target: 5'- cGGCGCGCGGGucgcGGCGgCCGGcaGCGUc -3' miRNA: 3'- -CUGUGCGUCCuu--CCGC-GGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 98196 | 0.68 | 0.619105 |
Target: 5'- gGGCGCgGCGGGcagcGGGCGCCGccacggcaGCGCg -3' miRNA: 3'- -CUGUG-CGUCCu---UCCGCGGCua------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 62547 | 0.68 | 0.619105 |
Target: 5'- -cCACGCcGaGAGGCGCCGccagcAUGCGCc -3' miRNA: 3'- cuGUGCGuCcUUCCGCGGC-----UACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 107510 | 0.68 | 0.619105 |
Target: 5'- -cCACGCAGGcc-GCGCCGAagggcaGCGCg -3' miRNA: 3'- cuGUGCGUCCuucCGCGGCUa-----CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 109879 | 0.68 | 0.619105 |
Target: 5'- gGGCcCGCGGGcGGGCGCCccgGgGCUa -3' miRNA: 3'- -CUGuGCGUCCuUCCGCGGcuaCgCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 29112 | 0.68 | 0.619105 |
Target: 5'- cGACGCcgaGGGGAgcccuGGCGCCGGgggGCGCc -3' miRNA: 3'- -CUGUGcg-UCCUU-----CCGCGGCUa--CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 38536 | 0.68 | 0.619105 |
Target: 5'- cGCGCGCcGGGcacaGCGCCGgcGCGCg -3' miRNA: 3'- cUGUGCGuCCUuc--CGCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 137036 | 0.68 | 0.629303 |
Target: 5'- cGGCGuCGguGGAGGGCGgaCCGucggcagGCGCg -3' miRNA: 3'- -CUGU-GCguCCUUCCGC--GGCua-----CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 34352 | 0.68 | 0.629303 |
Target: 5'- cGGC-CGaCGGGGccGGGCGCCGcgcgGCGCc -3' miRNA: 3'- -CUGuGC-GUCCU--UCCGCGGCua--CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 34930 | 0.68 | 0.629303 |
Target: 5'- -cCACGCGGG-GGGCGgCCG--GCGCg -3' miRNA: 3'- cuGUGCGUCCuUCCGC-GGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 30706 | 0.68 | 0.629303 |
Target: 5'- aGGCcCGCGGGAGccccGGCGCCGGgcCGCc -3' miRNA: 3'- -CUGuGCGUCCUU----CCGCGGCUacGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 15525 | 0.68 | 0.629303 |
Target: 5'- uGCAgGCAGGAgcggaAGGCGUCGuucgcgacGCGCg -3' miRNA: 3'- cUGUgCGUCCU-----UCCGCGGCua------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 107348 | 0.68 | 0.628282 |
Target: 5'- -cCGCGUugcGGAccugcgucgucguGGGCGCCGggGCGCc -3' miRNA: 3'- cuGUGCGu--CCU-------------UCCGCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 59857 | 0.68 | 0.626243 |
Target: 5'- cAUGCGCGGGAcgucggccucguacGGGUGCCGgcGgGCa -3' miRNA: 3'- cUGUGCGUCCU--------------UCCGCGGCuaCgCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 14767 | 0.67 | 0.680159 |
Target: 5'- -cCGCGaCAGGggGGcCGCCcc-GCGCa -3' miRNA: 3'- cuGUGC-GUCCuuCC-GCGGcuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 68955 | 0.67 | 0.680159 |
Target: 5'- aGGCGCGCGGGGA--C-CUGGUGCGCg -3' miRNA: 3'- -CUGUGCGUCCUUccGcGGCUACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 16053 | 0.67 | 0.680159 |
Target: 5'- gGGCA-GCGGGcccGCGCCGAgccgGCGCg -3' miRNA: 3'- -CUGUgCGUCCuucCGCGGCUa---CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 31579 | 0.67 | 0.670032 |
Target: 5'- gGGCGCGCcGGAcgugAGcGCGCuCGgcGCGCa -3' miRNA: 3'- -CUGUGCGuCCU----UC-CGCG-GCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 90755 | 0.67 | 0.670032 |
Target: 5'- --gGCGCGGGAcuuccccgAGGcCGCCGAgGcCGCUg -3' miRNA: 3'- cugUGCGUCCU--------UCC-GCGGCUaC-GCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 123172 | 0.67 | 0.680159 |
Target: 5'- gGGCGCGCGGGcguGGUGgCUGGUGUGg- -3' miRNA: 3'- -CUGUGCGUCCuu-CCGC-GGCUACGCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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