Results 61 - 80 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23794 | 3' | -58.8 | NC_005261.1 | + | 106681 | 0.7 | 0.528612 |
Target: 5'- cGCGCGCccgAGGGccGCGCCGAUcgcgucccaGCGCUg -3' miRNA: 3'- cUGUGCG---UCCUucCGCGGCUA---------CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 74686 | 0.7 | 0.528612 |
Target: 5'- cGAcCGCGCGGGAGcuGGcCGCCGcgcggGCGCg -3' miRNA: 3'- -CU-GUGCGUCCUU--CC-GCGGCua---CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 15780 | 0.7 | 0.528612 |
Target: 5'- aGGC-CGCuGGcGGGCGCCGcccGCGCg -3' miRNA: 3'- -CUGuGCGuCCuUCCGCGGCua-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 75481 | 0.7 | 0.537485 |
Target: 5'- cGGCgGCGCGGGccgcuacgagcgcGGGGCGCUGGagGCGCa -3' miRNA: 3'- -CUG-UGCGUCC-------------UUCCGCGGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 22651 | 0.7 | 0.538474 |
Target: 5'- aGACGCGCuGGc-GGCGCCuGGgcgGCGCc -3' miRNA: 3'- -CUGUGCGuCCuuCCGCGG-CUa--CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 20566 | 0.7 | 0.538474 |
Target: 5'- gGGCuGCGCAGc--GGCGCCGGcgGCGCg -3' miRNA: 3'- -CUG-UGCGUCcuuCCGCGGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 15008 | 0.7 | 0.542437 |
Target: 5'- --aGCGCGGGAggaggaguugucggcGGGUGCCGGggGCGUa -3' miRNA: 3'- cugUGCGUCCU---------------UCCGCGGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 136556 | 0.69 | 0.548399 |
Target: 5'- aGCugGUGGGGgcagaAGGCGCgGGUGgGCg -3' miRNA: 3'- cUGugCGUCCU-----UCCGCGgCUACgCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 105754 | 0.69 | 0.548399 |
Target: 5'- cGCGCGCGGGGaccuGGGUGCUcaggGCGCg -3' miRNA: 3'- cUGUGCGUCCU----UCCGCGGcua-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 101251 | 0.69 | 0.548399 |
Target: 5'- -uCGCGCAGc---GCGUCGAUGCGCUc -3' miRNA: 3'- cuGUGCGUCcuucCGCGGCUACGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 118379 | 0.69 | 0.55838 |
Target: 5'- gGGCGCGCGGcccGAGGCGCUGGcgGcCGCg -3' miRNA: 3'- -CUGUGCGUCc--UUCCGCGGCUa-C-GCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 97740 | 0.69 | 0.55838 |
Target: 5'- cGGCugGCAGGGgcgGGGCGggcUCGGcgGCGCg -3' miRNA: 3'- -CUGugCGUCCU---UCCGC---GGCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 76448 | 0.69 | 0.55838 |
Target: 5'- gGACGCGCccgacGGcGAcggcGGCGCCGgcGCGCg -3' miRNA: 3'- -CUGUGCG-----UC-CUu---CCGCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 71021 | 0.69 | 0.55838 |
Target: 5'- -cCGCGCAGGAAGGCGUCGuagagGUcCg -3' miRNA: 3'- cuGUGCGUCCUUCCGCGGCua---CGcGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 56392 | 0.69 | 0.55838 |
Target: 5'- aGCuCGCGGGGgcccuGGGCGCCc-UGCGCUu -3' miRNA: 3'- cUGuGCGUCCU-----UCCGCGGcuACGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 33593 | 0.69 | 0.55838 |
Target: 5'- aGCAC-CAGGGGcGGCGCCG--GCGCg -3' miRNA: 3'- cUGUGcGUCCUU-CCGCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 5799 | 0.69 | 0.55838 |
Target: 5'- aGAuCGCGaggaAGGAAgcucggcagcGGCgGCCGAUGCGCg -3' miRNA: 3'- -CU-GUGCg---UCCUU----------CCG-CGGCUACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 127777 | 0.69 | 0.562387 |
Target: 5'- aGACGCccggcugcucgagcgGCGGGccGGCGCCGcgGCGg- -3' miRNA: 3'- -CUGUG---------------CGUCCuuCCGCGGCuaCGCga -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 55279 | 0.69 | 0.568411 |
Target: 5'- uGGCGCGCcGGAggcggGGGCGCUGAagagccgGUGCg -3' miRNA: 3'- -CUGUGCGuCCU-----UCCGCGGCUa------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 74118 | 0.69 | 0.568411 |
Target: 5'- gGACcCGguGGuccuGGCGCCGGUGCu-- -3' miRNA: 3'- -CUGuGCguCCuu--CCGCGGCUACGcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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