miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 75834 0.69 0.568411
Target:  5'- -cCGCGCccGGGGAGGgGCgCGcgGCGCc -3'
miRNA:   3'- cuGUGCG--UCCUUCCgCG-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74118 0.69 0.568411
Target:  5'- gGACcCGguGGuccuGGCGCCGGUGCu-- -3'
miRNA:   3'- -CUGuGCguCCuu--CCGCGGCUACGcga -5'
23794 3' -58.8 NC_005261.1 + 55279 0.69 0.568411
Target:  5'- uGGCGCGCcGGAggcggGGGCGCUGAagagccgGUGCg -3'
miRNA:   3'- -CUGUGCGuCCU-----UCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 11103 0.69 0.568411
Target:  5'- gGACGCGaCGGGAcgAGauGCGCCGGcagcgUGCGCc -3'
miRNA:   3'- -CUGUGC-GUCCU--UC--CGCGGCU-----ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 105560 0.69 0.572437
Target:  5'- cGCGCGCAGGGccagguacgcguagaGGGCcUCGggGCGCg -3'
miRNA:   3'- cUGUGCGUCCU---------------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 80095 0.69 0.578488
Target:  5'- cGGCGCGCGcgccgcgguaccGGcuuGGGCGCCGcgGCaGCg -3'
miRNA:   3'- -CUGUGCGU------------CCu--UCCGCGGCuaCG-CGa -5'
23794 3' -58.8 NC_005261.1 + 97116 0.69 0.578488
Target:  5'- gGGC-CGCGGccGGAGGCGCCGcgGCcacGCUc -3'
miRNA:   3'- -CUGuGCGUC--CUUCCGCGGCuaCG---CGA- -5'
23794 3' -58.8 NC_005261.1 + 53997 0.69 0.578488
Target:  5'- aGCGCGCGGcGcacAGGCGCCGccgcgaGCGCUu -3'
miRNA:   3'- cUGUGCGUC-Cu--UCCGCGGCua----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 3552 0.69 0.578488
Target:  5'- aGCGCgGCGGGcgcGGCGCCGcuaagGCGCg -3'
miRNA:   3'- cUGUG-CGUCCuu-CCGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74450 0.69 0.588602
Target:  5'- cGGCGgGgGGuGggGGCGCCGcccccgGCGCg -3'
miRNA:   3'- -CUGUgCgUC-CuuCCGCGGCua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 23721 0.69 0.588602
Target:  5'- uGGCAaGCGGGuGGccGCGCCGAgGCGCg -3'
miRNA:   3'- -CUGUgCGUCCuUC--CGCGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 21766 0.69 0.588602
Target:  5'- cGCGCGcCGGGcGAGcCGCCGcgGCGCg -3'
miRNA:   3'- cUGUGC-GUCC-UUCcGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 124914 0.69 0.588602
Target:  5'- -cCACGCGGGAagccgcggAGGCuCCGccGCGCg -3'
miRNA:   3'- cuGUGCGUCCU--------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 83048 0.69 0.588602
Target:  5'- cGC-CGCGGGAGGGgGCUcccUGCGCg -3'
miRNA:   3'- cUGuGCGUCCUUCCgCGGcu-ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 69761 0.69 0.588602
Target:  5'- aGCGCGgGGGgcGGCGCCGGggacugaGcCGCUc -3'
miRNA:   3'- cUGUGCgUCCuuCCGCGGCUa------C-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 118894 0.69 0.592657
Target:  5'- gGGCGCGCugguggccugcgucuGGGuccGGCGCCGcggGCGCg -3'
miRNA:   3'- -CUGUGCG---------------UCCuu-CCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 117465 0.69 0.598748
Target:  5'- uGCG-GCAGGucGGCGgCGAcGCGCUg -3'
miRNA:   3'- cUGUgCGUCCuuCCGCgGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 52250 0.69 0.598748
Target:  5'- ---uCGUGGGAGGGCGCUGuccGCGCc -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 95763 0.69 0.598748
Target:  5'- gGGgGCGCcGGGAGccucgcgcgcuGCGCCGgcGCGCUg -3'
miRNA:   3'- -CUgUGCGuCCUUC-----------CGCGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 111598 0.68 0.608918
Target:  5'- aGCACGCGGaGuGGGCGCgGcUGgGCUg -3'
miRNA:   3'- cUGUGCGUC-CuUCCGCGgCuACgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.