miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 5488 0.67 0.719198
Target:  5'- cGCGCGCcGGggGGUagcugggGCCGcgGCaGCg -3'
miRNA:   3'- cUGUGCGuCCuuCCG-------CGGCuaCG-CGa -5'
23794 3' -58.8 NC_005261.1 + 29461 0.67 0.719198
Target:  5'- gGGgACGCGGGGAagcaguacgcGGCGCUGGUggaccugguguacGCGCg -3'
miRNA:   3'- -CUgUGCGUCCUU----------CCGCGGCUA-------------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 2644 0.67 0.71027
Target:  5'- aGCACGCGGGcGGGCagcggcggcucCCGccGCGCUg -3'
miRNA:   3'- cUGUGCGUCCuUCCGc----------GGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 121048 0.67 0.71027
Target:  5'- cACACGUcgcGGuuguGGCGCgCGGUGUGCg -3'
miRNA:   3'- cUGUGCGu--CCuu--CCGCG-GCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 3722 0.67 0.71027
Target:  5'- aGACGCGCcgcugccGGAc-GCGCCGGcgGCGCa -3'
miRNA:   3'- -CUGUGCGu------CCUucCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 23174 0.67 0.71027
Target:  5'- aGGCGCGCcGGggGcgacagcgagcGCGCCGcgGgGCc -3'
miRNA:   3'- -CUGUGCGuCCuuC-----------CGCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 31464 0.67 0.71027
Target:  5'- aGCGCcgGCGGccuGAGuGGcCGCCGGUGCGCg -3'
miRNA:   3'- cUGUG--CGUC---CUU-CC-GCGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 28561 0.67 0.71027
Target:  5'- cGACGCGgcccgcCGGGccGAGGCGCgCGA-GCGCc -3'
miRNA:   3'- -CUGUGC------GUCC--UUCCGCG-GCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 112072 0.67 0.700287
Target:  5'- uGCccuCGuCGGcGAGGGCGCCacguGGUGCGCg -3'
miRNA:   3'- cUGu--GC-GUC-CUUCCGCGG----CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 135210 0.67 0.700287
Target:  5'- aGGCgGCGCA-GAGGGCcacgGCCGA-GCGCg -3'
miRNA:   3'- -CUG-UGCGUcCUUCCG----CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 133340 0.67 0.690247
Target:  5'- cGGCACGCGcGcgcGGCGCUGccGCGCa -3'
miRNA:   3'- -CUGUGCGUcCuu-CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 27740 0.67 0.690247
Target:  5'- aGACGCGCGGGcaGAGGaGCCGAgcuaGCc -3'
miRNA:   3'- -CUGUGCGUCC--UUCCgCGGCUacg-CGa -5'
23794 3' -58.8 NC_005261.1 + 33938 0.67 0.690247
Target:  5'- cGCccaGCAGGAuGGCGCCGccUGuCGCUg -3'
miRNA:   3'- cUGug-CGUCCUuCCGCGGCu-AC-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 16281 0.67 0.690247
Target:  5'- cGGCuCGCccGGGggGGCGCCGucggGCccaGCg -3'
miRNA:   3'- -CUGuGCG--UCCuuCCGCGGCua--CG---CGa -5'
23794 3' -58.8 NC_005261.1 + 2589 0.67 0.690247
Target:  5'- cGGCACGCGgcGGAAGcCGCCGucgGCGg- -3'
miRNA:   3'- -CUGUGCGU--CCUUCcGCGGCua-CGCga -5'
23794 3' -58.8 NC_005261.1 + 86212 0.67 0.690247
Target:  5'- cGGCGCGCc-GAaccgGGGCaGCCGGUGcCGCa -3'
miRNA:   3'- -CUGUGCGucCU----UCCG-CGGCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 14767 0.67 0.680159
Target:  5'- -cCGCGaCAGGggGGcCGCCcc-GCGCa -3'
miRNA:   3'- cuGUGC-GUCCuuCC-GCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 68955 0.67 0.680159
Target:  5'- aGGCGCGCGGGGA--C-CUGGUGCGCg -3'
miRNA:   3'- -CUGUGCGUCCUUccGcGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 16053 0.67 0.680159
Target:  5'- gGGCA-GCGGGcccGCGCCGAgccgGCGCg -3'
miRNA:   3'- -CUGUgCGUCCuucCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 123172 0.67 0.680159
Target:  5'- gGGCGCGCGGGcguGGUGgCUGGUGUGg- -3'
miRNA:   3'- -CUGUGCGUCCuu-CCGC-GGCUACGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.