miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 31579 0.67 0.670032
Target:  5'- gGGCGCGCcGGAcgugAGcGCGCuCGgcGCGCa -3'
miRNA:   3'- -CUGUGCGuCCU----UC-CGCG-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 3883 0.67 0.670032
Target:  5'- cGGCGCGCAGcucGGCGagCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCcuuCCGCg-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 90755 0.67 0.670032
Target:  5'- --gGCGCGGGAcuuccccgAGGcCGCCGAgGcCGCUg -3'
miRNA:   3'- cugUGCGUCCU--------UCC-GCGGCUaC-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 71420 0.68 0.659875
Target:  5'- --gGCGCGGGGcccggcccGGGC-CCGcgGCGCg -3'
miRNA:   3'- cugUGCGUCCU--------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 77263 0.68 0.659875
Target:  5'- gGGCGCGCucgcGGgcGGCGUCugcauUGCGCUu -3'
miRNA:   3'- -CUGUGCGu---CCuuCCGCGGcu---ACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 43113 0.68 0.659875
Target:  5'- cGugGCGCGGGAuuGGcGCGCCuacacacGCGCg -3'
miRNA:   3'- -CugUGCGUCCU--UC-CGCGGcua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 105380 0.68 0.659875
Target:  5'- cGCGCGCGGGugcGCGCUGAccacGCGCc -3'
miRNA:   3'- cUGUGCGUCCuucCGCGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 66600 0.68 0.658858
Target:  5'- uGCGCGCGagcugcuGGAuGGCGCgCG-UGCGCa -3'
miRNA:   3'- cUGUGCGU-------CCUuCCGCG-GCuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 73740 0.68 0.656823
Target:  5'- uGCGCGCGGGGGuccGGUGCCacggccgcuucuacGAgGCGCUg -3'
miRNA:   3'- cUGUGCGUCCUU---CCGCGG--------------CUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 121674 0.68 0.649695
Target:  5'- --gGCGUAGGuguAGGCGCCcuccagguUGCGCa -3'
miRNA:   3'- cugUGCGUCCu--UCCGCGGcu------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 134971 0.68 0.649695
Target:  5'- cGACGCagacgGCgAGGAcgGGGcCGCCGggGCGCc -3'
miRNA:   3'- -CUGUG-----CG-UCCU--UCC-GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 49267 0.68 0.649695
Target:  5'- cGGCGCGCacguccgcgAGGAAGGCGCagaagcccgcggCGGUgaGCGCc -3'
miRNA:   3'- -CUGUGCG---------UCCUUCCGCG------------GCUA--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 117914 0.68 0.649695
Target:  5'- cGGCuGCGCGGGAacgaAGGCcggcugcgGCCcGUGCGCg -3'
miRNA:   3'- -CUG-UGCGUCCU----UCCG--------CGGcUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 74048 0.68 0.649695
Target:  5'- aGCGCGCcGGggGGCuGCgGcagcUGCGCg -3'
miRNA:   3'- cUGUGCGuCCuuCCG-CGgCu---ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 51735 0.68 0.646638
Target:  5'- cGCACGCAGGcccccGGGCuGCCGcuggccgugaagcugGCGCUg -3'
miRNA:   3'- cUGUGCGUCCu----UCCG-CGGCua-------------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 118780 0.68 0.639502
Target:  5'- cGACGCuGCAGacGGcGCGCUGAUGgCGCa -3'
miRNA:   3'- -CUGUG-CGUCcuUC-CGCGGCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 131932 0.68 0.639502
Target:  5'- cGCGCGCGGGAccgcGGUGCCc--GCGCc -3'
miRNA:   3'- cUGUGCGUCCUu---CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74284 0.68 0.639502
Target:  5'- cGGCGgGCGGGgcGGuCGCCGccGgGCa -3'
miRNA:   3'- -CUGUgCGUCCuuCC-GCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 118662 0.68 0.639502
Target:  5'- cGCGCGCucGGGGcugaGGGCGgCGG-GCGCUg -3'
miRNA:   3'- cUGUGCG--UCCU----UCCGCgGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 59080 0.68 0.639502
Target:  5'- cGCGCGCGGGu--GCGCCGcgcccucGCGCUc -3'
miRNA:   3'- cUGUGCGUCCuucCGCGGCua-----CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.