miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 38311 0.72 0.425571
Target:  5'- aGCGCGCAGGgcGGC-CCGAUGgUGUUc -3'
miRNA:   3'- cUGUGCGUCCuuCCGcGGCUAC-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 38536 0.68 0.619105
Target:  5'- cGCGCGCcGGGcacaGCGCCGgcGCGCg -3'
miRNA:   3'- cUGUGCGuCCUuc--CGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 38914 0.66 0.743664
Target:  5'- cGGCGCGCGGGcccgcgcgccaagccGgcggccGGGCggGCCGcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCC---------------U------UCCG--CGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 39784 0.66 0.730029
Target:  5'- gGACGuCGCcGGggGGCGgCGcgGcCGCc -3'
miRNA:   3'- -CUGU-GCGuCCuuCCGCgGCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 43113 0.68 0.659875
Target:  5'- cGugGCGCGGGAuuGGcGCGCCuacacacGCGCg -3'
miRNA:   3'- -CugUGCGUCCU--UC-CGCGGcua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 43783 0.76 0.235182
Target:  5'- cGGCGCGC-GGAGGGCGCCGcgggugaggggGCGCc -3'
miRNA:   3'- -CUGUGCGuCCUUCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 44266 0.72 0.425571
Target:  5'- cGGCGCGCGGGggGGCGgggcCCGccGCcaGCg -3'
miRNA:   3'- -CUGUGCGUCCuuCCGC----GGCuaCG--CGa -5'
23794 3' -58.8 NC_005261.1 + 44723 0.74 0.327986
Target:  5'- cGCGCGCAGGGcgcugcagcuGGGCcCCGAgcUGCGCg -3'
miRNA:   3'- cUGUGCGUCCU----------UCCGcGGCU--ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 45942 0.74 0.327986
Target:  5'- cGCGCGCgAGGGccgccaGGGCGCCGuugagcAUGCGCg -3'
miRNA:   3'- cUGUGCG-UCCU------UCCGCGGC------UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 46808 0.72 0.425571
Target:  5'- cGGCGCGCGcGGAuGGCGCgCGccagGCGCg -3'
miRNA:   3'- -CUGUGCGU-CCUuCCGCG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 49235 0.72 0.416797
Target:  5'- cGCGCGCAGGucGGcCGCCGccGCGg- -3'
miRNA:   3'- cUGUGCGUCCuuCC-GCGGCuaCGCga -5'
23794 3' -58.8 NC_005261.1 + 49267 0.68 0.649695
Target:  5'- cGGCGCGCacguccgcgAGGAAGGCGCagaagcccgcggCGGUgaGCGCc -3'
miRNA:   3'- -CUGUGCG---------UCCUUCCGCG------------GCUA--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 50640 0.7 0.49945
Target:  5'- gGGCG-GCGGGguGGCGCCGGcgaacGCGCUc -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCUa----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 51735 0.68 0.646638
Target:  5'- cGCACGCAGGcccccGGGCuGCCGcuggccgugaagcugGCGCUg -3'
miRNA:   3'- cUGUGCGUCCu----UCCG-CGGCua-------------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 52250 0.69 0.598748
Target:  5'- ---uCGUGGGAGGGCGCUGuccGCGCc -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 52986 0.7 0.509095
Target:  5'- cGGCAgGCGGGGGcGGCGCCcagGCGUc -3'
miRNA:   3'- -CUGUgCGUCCUU-CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 53089 0.81 0.113362
Target:  5'- gGAC-CGCAGGAAGGCacgcagcGCCGcgGCGCUg -3'
miRNA:   3'- -CUGuGCGUCCUUCCG-------CGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 53324 0.66 0.730029
Target:  5'- aGGC-CGCAGGuguGCGCCucUGCGCc -3'
miRNA:   3'- -CUGuGCGUCCuucCGCGGcuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 53997 0.69 0.578488
Target:  5'- aGCGCGCGGcGcacAGGCGCCGccgcgaGCGCUu -3'
miRNA:   3'- cUGUGCGUC-Cu--UCCGCGGCua----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 54832 0.66 0.768464
Target:  5'- cAUACGCGGGcAGGGCuaGCUGccgGCGCc -3'
miRNA:   3'- cUGUGCGUCC-UUCCG--CGGCua-CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.