miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 55279 0.69 0.568411
Target:  5'- uGGCGCGCcGGAggcggGGGCGCUGAagagccgGUGCg -3'
miRNA:   3'- -CUGUGCGuCCU-----UCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 56173 0.66 0.749451
Target:  5'- gGGCcCGCGGGGAGGa--CGAcGCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCgcgGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 56392 0.69 0.55838
Target:  5'- aGCuCGCGGGGgcccuGGGCGCCc-UGCGCUu -3'
miRNA:   3'- cUGuGCGUCCU-----UCCGCGGcuACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 57722 0.71 0.480411
Target:  5'- uGCACG-AGGuaGAGGCGCCGGUcCGCg -3'
miRNA:   3'- cUGUGCgUCC--UUCCGCGGCUAcGCGa -5'
23794 3' -58.8 NC_005261.1 + 58292 0.73 0.358596
Target:  5'- cGGCGCGCcGGggGGCGCgGGgaggGgGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCUa---CgCGa -5'
23794 3' -58.8 NC_005261.1 + 58796 0.71 0.434455
Target:  5'- cGCGCGCAGGAAGGCcgGCaCGcgccGCGCc -3'
miRNA:   3'- cUGUGCGUCCUUCCG--CG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 59023 0.73 0.374634
Target:  5'- cGGCGcCGcCAGGAacGGGUGCCGccGCGCg -3'
miRNA:   3'- -CUGU-GC-GUCCU--UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59080 0.68 0.639502
Target:  5'- cGCGCGCGGGu--GCGCCGcgcccucGCGCUc -3'
miRNA:   3'- cUGUGCGUCCuucCGCGGCua-----CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 59429 0.67 0.720187
Target:  5'- -uCGCGCGgcccGGcAGGCGCCGGcagcaGCGCg -3'
miRNA:   3'- cuGUGCGU----CCuUCCGCGGCUa----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 59857 0.68 0.626243
Target:  5'- cAUGCGCGGGAcgucggccucguacGGGUGCCGgcGgGCa -3'
miRNA:   3'- cUGUGCGUCCU--------------UCCGCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 60826 0.66 0.749451
Target:  5'- -uCAUGCAGGAGaucaucggcGGCGgCGAggucGCGCg -3'
miRNA:   3'- cuGUGCGUCCUU---------CCGCgGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 62518 0.71 0.452538
Target:  5'- ---cUGCAGGAAGGCGCC---GCGCg -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 62547 0.68 0.619105
Target:  5'- -cCACGCcGaGAGGCGCCGccagcAUGCGCc -3'
miRNA:   3'- cuGUGCGuCcUUCCGCGGC-----UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 66600 0.68 0.658858
Target:  5'- uGCGCGCGagcugcuGGAuGGCGCgCG-UGCGCa -3'
miRNA:   3'- cUGUGCGU-------CCUuCCGCG-GCuACGCGa -5'
23794 3' -58.8 NC_005261.1 + 66918 0.66 0.739786
Target:  5'- -gUACGUgcccAGGAGGGCGUCGAagGCGg- -3'
miRNA:   3'- cuGUGCG----UCCUUCCGCGGCUa-CGCga -5'
23794 3' -58.8 NC_005261.1 + 67831 0.75 0.285778
Target:  5'- cGCGCGCAGGAGGGCcgcacucuccggGCCGA-GCuGCUc -3'
miRNA:   3'- cUGUGCGUCCUUCCG------------CGGCUaCG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 68594 0.71 0.443445
Target:  5'- gGGC-CGCGGGAGcGGgGCCGAcgGCGUg -3'
miRNA:   3'- -CUGuGCGUCCUU-CCgCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 68735 0.68 0.639502
Target:  5'- gGGCGCcgGCGGGAAGaagcgccCGCCGggGCGCc -3'
miRNA:   3'- -CUGUG--CGUCCUUCc------GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 68955 0.67 0.680159
Target:  5'- aGGCGCGCGGGGA--C-CUGGUGCGCg -3'
miRNA:   3'- -CUGUGCGUCCUUccGcGGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 69230 0.72 0.425571
Target:  5'- uGCGCGCuGGGgcGGUucGCCGAgGCGCUg -3'
miRNA:   3'- cUGUGCG-UCCuuCCG--CGGCUaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.