miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 69514 0.66 0.749451
Target:  5'- cGGCGgGCugccGGAgcuggcgcGGGCGCUGgcGCGCg -3'
miRNA:   3'- -CUGUgCGu---CCU--------UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 69761 0.69 0.588602
Target:  5'- aGCGCGgGGGgcGGCGCCGGggacugaGcCGCUc -3'
miRNA:   3'- cUGUGCgUCCuuCCGCGGCUa------C-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 70217 0.72 0.382832
Target:  5'- gGGCAUGCuGGAGuuGGCGCCGc-GCGCa -3'
miRNA:   3'- -CUGUGCGuCCUU--CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 71021 0.69 0.55838
Target:  5'- -cCGCGCAGGAAGGCGUCGuagagGUcCg -3'
miRNA:   3'- cuGUGCGUCCUUCCGCGGCua---CGcGa -5'
23794 3' -58.8 NC_005261.1 + 71076 0.66 0.768464
Target:  5'- cGGCGgGCGGGGcguccGGGC-CCGAgaagGCGUa -3'
miRNA:   3'- -CUGUgCGUCCU-----UCCGcGGCUa---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 71420 0.68 0.659875
Target:  5'- --gGCGCGGGGcccggcccGGGC-CCGcgGCGCg -3'
miRNA:   3'- cugUGCGUCCU--------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 71468 0.73 0.358596
Target:  5'- aGCAU-CAGGAAGGCcucCCGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCCUUCCGc--GGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 71965 0.66 0.759013
Target:  5'- --gGCGCGGGGcgcggAGcGCGCggcaGGUGCGCa -3'
miRNA:   3'- cugUGCGUCCU-----UC-CGCGg---CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 73056 0.66 0.75711
Target:  5'- -cCGCGCcuAGGAAGGCGCacguguucgccaGGaGCGCg -3'
miRNA:   3'- cuGUGCG--UCCUUCCGCGg-----------CUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 73711 0.66 0.759013
Target:  5'- --gGCGCAGGAccGCgGUCGGcgUGCGCg -3'
miRNA:   3'- cugUGCGUCCUucCG-CGGCU--ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 73740 0.68 0.656823
Target:  5'- uGCGCGCGGGGGuccGGUGCCacggccgcuucuacGAgGCGCUg -3'
miRNA:   3'- cUGUGCGUCCUU---CCGCGG--------------CUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 74048 0.68 0.649695
Target:  5'- aGCGCGCcGGggGGCuGCgGcagcUGCGCg -3'
miRNA:   3'- cUGUGCGuCCuuCCG-CGgCu---ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 74118 0.69 0.568411
Target:  5'- gGACcCGguGGuccuGGCGCCGGUGCu-- -3'
miRNA:   3'- -CUGuGCguCCuu--CCGCGGCUACGcga -5'
23794 3' -58.8 NC_005261.1 + 74284 0.68 0.639502
Target:  5'- cGGCGgGCGGGgcGGuCGCCGccGgGCa -3'
miRNA:   3'- -CUGUgCGUCCuuCC-GCGGCuaCgCGa -5'
23794 3' -58.8 NC_005261.1 + 74450 0.69 0.588602
Target:  5'- cGGCGgGgGGuGggGGCGCCGcccccgGCGCg -3'
miRNA:   3'- -CUGUgCgUC-CuuCCGCGGCua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74501 0.71 0.434455
Target:  5'- cGGCGCucuuCGGGgcGGCGCCGGggccaugGCGCUu -3'
miRNA:   3'- -CUGUGc---GUCCuuCCGCGGCUa------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 74686 0.7 0.528612
Target:  5'- cGAcCGCGCGGGAGcuGGcCGCCGcgcggGCGCg -3'
miRNA:   3'- -CU-GUGCGUCCUU--CC-GCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74918 0.7 0.518817
Target:  5'- cGCGCGgGGGAGGGCGaggacggggaCUGcgGCGCg -3'
miRNA:   3'- cUGUGCgUCCUUCCGC----------GGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 75481 0.7 0.537485
Target:  5'- cGGCgGCGCGGGccgcuacgagcgcGGGGCGCUGGagGCGCa -3'
miRNA:   3'- -CUG-UGCGUCC-------------UUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 75571 0.71 0.452538
Target:  5'- cGGgGCGCuGGgcGGCGgCGcgGCGCUc -3'
miRNA:   3'- -CUgUGCGuCCuuCCGCgGCuaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.