miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 125342 0.71 0.452538
Target:  5'- aGCGCGCAGGGcguccagcAGGCuccGCCGGgcagagggGCGCUg -3'
miRNA:   3'- cUGUGCGUCCU--------UCCG---CGGCUa-------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 125279 0.67 0.720187
Target:  5'- gGGC-CGCuGGAagucaggccgcGGGCGCCGGacccgcggGCGCUc -3'
miRNA:   3'- -CUGuGCGuCCU-----------UCCGCGGCUa-------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 125068 0.67 0.720187
Target:  5'- uGGCGCGCAGGuGGGCcGUcaaguagucuugCGggGCGCc -3'
miRNA:   3'- -CUGUGCGUCCuUCCG-CG------------GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 124914 0.69 0.588602
Target:  5'- -cCACGCGGGAagccgcggAGGCuCCGccGCGCg -3'
miRNA:   3'- cuGUGCGUCCU--------UCCGcGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 124245 0.72 0.382832
Target:  5'- cGC-CGCGGGcAGGCGCCGcgcgGCGCc -3'
miRNA:   3'- cUGuGCGUCCuUCCGCGGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 123884 0.69 0.568411
Target:  5'- uGGCGCGCAcuucgcGGAAGGcCGCCGcUGUGg- -3'
miRNA:   3'- -CUGUGCGU------CCUUCC-GCGGCuACGCga -5'
23794 3' -58.8 NC_005261.1 + 123654 0.66 0.749451
Target:  5'- -cCACGCccAGGAAGGcCGCUGucaucucGCGCa -3'
miRNA:   3'- cuGUGCG--UCCUUCC-GCGGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 123172 0.67 0.680159
Target:  5'- gGGCGCGCGGGcguGGUGgCUGGUGUGg- -3'
miRNA:   3'- -CUGUGCGUCCuu-CCGC-GGCUACGCga -5'
23794 3' -58.8 NC_005261.1 + 121674 0.68 0.649695
Target:  5'- --gGCGUAGGuguAGGCGCCcuccagguUGCGCa -3'
miRNA:   3'- cugUGCGUCCu--UCCGCGGcu------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 121048 0.67 0.71027
Target:  5'- cACACGUcgcGGuuguGGCGCgCGGUGUGCg -3'
miRNA:   3'- cUGUGCGu--CCuu--CCGCG-GCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 120942 0.66 0.759013
Target:  5'- --gGCGCGGGAAGGUGgaggcucgcgccCCGcgggGCGCg -3'
miRNA:   3'- cugUGCGUCCUUCCGC------------GGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 119988 0.73 0.350759
Target:  5'- cGGCcgACGCuGGAGGGCGCCGGcuacgcggccgUGUGCc -3'
miRNA:   3'- -CUG--UGCGuCCUUCCGCGGCU-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 118894 0.69 0.592657
Target:  5'- gGGCGCGCugguggccugcgucuGGGuccGGCGCCGcggGCGCg -3'
miRNA:   3'- -CUGUGCG---------------UCCuu-CCGCGGCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118780 0.68 0.639502
Target:  5'- cGACGCuGCAGacGGcGCGCUGAUGgCGCa -3'
miRNA:   3'- -CUGUG-CGUCcuUC-CGCGGCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 118662 0.68 0.639502
Target:  5'- cGCGCGCucGGGGcugaGGGCGgCGG-GCGCUg -3'
miRNA:   3'- cUGUGCG--UCCU----UCCGCgGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 118550 0.66 0.730029
Target:  5'- cGGCGCGCGcGAGGaCGCCGugcccGCGCg -3'
miRNA:   3'- -CUGUGCGUcCUUCcGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 118379 0.69 0.55838
Target:  5'- gGGCGCGCGGcccGAGGCGCUGGcgGcCGCg -3'
miRNA:   3'- -CUGUGCGUCc--UUCCGCGGCUa-C-GCGa -5'
23794 3' -58.8 NC_005261.1 + 117914 0.68 0.649695
Target:  5'- cGGCuGCGCGGGAacgaAGGCcggcugcgGCCcGUGCGCg -3'
miRNA:   3'- -CUG-UGCGUCCU----UCCG--------CGGcUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 117465 0.69 0.598748
Target:  5'- uGCG-GCAGGucGGCGgCGAcGCGCUg -3'
miRNA:   3'- cUGUgCGUCCuuCCGCgGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 116494 0.66 0.749451
Target:  5'- gGGCGCGCGGuauaAAGaGCGCCGccgcggcgGCGCg -3'
miRNA:   3'- -CUGUGCGUCc---UUC-CGCGGCua------CGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.