miRNA display CGI


Results 61 - 80 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 100958 0.75 0.292504
Target:  5'- cGGCGCGCGcggucucguGGAAGGCGCCca-GCGCg -3'
miRNA:   3'- -CUGUGCGU---------CCUUCCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 100640 0.66 0.768464
Target:  5'- aGGCGCGCGGccc-GCGCCGcaacgGCGCg -3'
miRNA:   3'- -CUGUGCGUCcuucCGCGGCua---CGCGa -5'
23794 3' -58.8 NC_005261.1 + 99555 0.78 0.183881
Target:  5'- cGGCGCGcCAGGAAGGCGUCGuagcucugggccUGCGCg -3'
miRNA:   3'- -CUGUGC-GUCCUUCCGCGGCu-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 98734 0.66 0.739786
Target:  5'- gGGCACGCGGccgcgcGGGCGuuGGccGCGCg -3'
miRNA:   3'- -CUGUGCGUCcu----UCCGCggCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 98292 0.66 0.764698
Target:  5'- cGGCGCGUccgcggccucGGGGgcGGGCGCCGccgccagcggcgGCGCg -3'
miRNA:   3'- -CUGUGCG----------UCCU--UCCGCGGCua----------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 98196 0.68 0.619105
Target:  5'- gGGCGCgGCGGGcagcGGGCGCCGccacggcaGCGCg -3'
miRNA:   3'- -CUGUG-CGUCCu---UCCGCGGCua------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 97740 0.69 0.55838
Target:  5'- cGGCugGCAGGGgcgGGGCGggcUCGGcgGCGCg -3'
miRNA:   3'- -CUGugCGUCCU---UCCGC---GGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 97633 0.66 0.739786
Target:  5'- aGCGgGCGGaGcGGGCGCgGGUGcCGCa -3'
miRNA:   3'- cUGUgCGUC-CuUCCGCGgCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 97218 0.66 0.749451
Target:  5'- -cCACGCucGGAGGCGCUG--GCGCc -3'
miRNA:   3'- cuGUGCGucCUUCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 97116 0.69 0.578488
Target:  5'- gGGC-CGCGGccGGAGGCGCCGcgGCcacGCUc -3'
miRNA:   3'- -CUGuGCGUC--CUUCCGCGGCuaCG---CGA- -5'
23794 3' -58.8 NC_005261.1 + 95763 0.69 0.598748
Target:  5'- gGGgGCGCcGGGAGccucgcgcgcuGCGCCGgcGCGCUg -3'
miRNA:   3'- -CUgUGCGuCCUUC-----------CGCGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 95708 0.66 0.749451
Target:  5'- uGCGCGCGGGcucgcgcucGGGC-CCGccGCGCUc -3'
miRNA:   3'- cUGUGCGUCCu--------UCCGcGGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 95654 0.67 0.720187
Target:  5'- cGACGCGCGGcgccgcGAcGGGCGCgGGUGUGa- -3'
miRNA:   3'- -CUGUGCGUC------CU-UCCGCGgCUACGCga -5'
23794 3' -58.8 NC_005261.1 + 94573 0.72 0.425571
Target:  5'- cGCgACGUAGG-GGGCGCCGAacGCGCc -3'
miRNA:   3'- cUG-UGCGUCCuUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 94337 0.66 0.738815
Target:  5'- -uCGCGCcGGuAGGCGUCGAUcguccggcacacaGCGCa -3'
miRNA:   3'- cuGUGCGuCCuUCCGCGGCUA-------------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 94261 0.73 0.349207
Target:  5'- --gGCGCAGGgcGGCGCCGcgaggcucuugGCGCa -3'
miRNA:   3'- cugUGCGUCCuuCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 94157 0.65 0.775008
Target:  5'- aGCGCcCGGGucgcgAAGGCGCCcaccagcguggcgcGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCC-----UUCCGCGG--------------CUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 93680 0.67 0.720187
Target:  5'- cGGCgGCGCcGGcGGGGCGCCGGcggGUGCc -3'
miRNA:   3'- -CUG-UGCGuCC-UUCCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 93353 0.67 0.720187
Target:  5'- cGCGCGCAGcgc-GCGCCaGUGCGCc -3'
miRNA:   3'- cUGUGCGUCcuucCGCGGcUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 90755 0.67 0.670032
Target:  5'- --gGCGCGGGAcuuccccgAGGcCGCCGAgGcCGCUg -3'
miRNA:   3'- cugUGCGUCCU--------UCC-GCGGCUaC-GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.