miRNA display CGI


Results 81 - 100 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 90195 0.67 0.719198
Target:  5'- --gACGCAGGGagcgcggGGGCGgCGGaGCGCc -3'
miRNA:   3'- cugUGCGUCCU-------UCCGCgGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 88801 0.69 0.568411
Target:  5'- cGCGCaGCAGGAcgccggcggcgGGGCGgCGgcGCGCg -3'
miRNA:   3'- cUGUG-CGUCCU-----------UCCGCgGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 87887 0.7 0.509095
Target:  5'- aGAgGCGCGGaGAGGGCggGCCGG-GCGUa -3'
miRNA:   3'- -CUgUGCGUC-CUUCCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 87476 0.66 0.739786
Target:  5'- cGCGCGuCAGGuucGGCGCgGccGUGCUg -3'
miRNA:   3'- cUGUGC-GUCCuu-CCGCGgCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 87423 0.75 0.279174
Target:  5'- gGGCGCGcCGGcGAAGGCGCCGAagccgaaGCGCc -3'
miRNA:   3'- -CUGUGC-GUC-CUUCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 86212 0.67 0.690247
Target:  5'- cGGCGCGCc-GAaccgGGGCaGCCGGUGcCGCa -3'
miRNA:   3'- -CUGUGCGucCU----UCCG-CGGCUAC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 83680 0.68 0.639502
Target:  5'- gGGCGCGCAGcgcgccgccgaGgcGGCGCCGcagccaGCGCa -3'
miRNA:   3'- -CUGUGCGUC-----------CuuCCGCGGCua----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 83353 0.73 0.350759
Target:  5'- uGGCcCGCAGGAAGGCGUccacgucggCGA-GCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCGCG---------GCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 83048 0.69 0.588602
Target:  5'- cGC-CGCGGGAGGGgGCUcccUGCGCg -3'
miRNA:   3'- cUGuGCGUCCUUCCgCGGcu-ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 82171 0.74 0.320642
Target:  5'- aGCGCgGCGcGGAAGGCGCgGcGUGCGCa -3'
miRNA:   3'- cUGUG-CGU-CCUUCCGCGgC-UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 82114 0.67 0.720187
Target:  5'- uGCGCGUcgaAGGu-GGCGuCCGAgGCGCg -3'
miRNA:   3'- cUGUGCG---UCCuuCCGC-GGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 81360 0.7 0.49945
Target:  5'- gGGCuuGCGGG-GGGCGCCGGgcuCGCUg -3'
miRNA:   3'- -CUGugCGUCCuUCCGCGGCUac-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 80095 0.69 0.578488
Target:  5'- cGGCGCGCGcgccgcgguaccGGcuuGGGCGCCGcgGCaGCg -3'
miRNA:   3'- -CUGUGCGU------------CCu--UCCGCGGCuaCG-CGa -5'
23794 3' -58.8 NC_005261.1 + 80063 0.67 0.720187
Target:  5'- cGGCGgGCGcGGggGGCGUgGggGaCGCg -3'
miRNA:   3'- -CUGUgCGU-CCuuCCGCGgCuaC-GCGa -5'
23794 3' -58.8 NC_005261.1 + 77263 0.68 0.659875
Target:  5'- gGGCGCGCucgcGGgcGGCGUCugcauUGCGCUu -3'
miRNA:   3'- -CUGUGCGu---CCuuCCGCGGcu---ACGCGA- -5'
23794 3' -58.8 NC_005261.1 + 76448 0.69 0.55838
Target:  5'- gGACGCGCccgacGGcGAcggcGGCGCCGgcGCGCg -3'
miRNA:   3'- -CUGUGCG-----UC-CUu---CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 75834 0.69 0.568411
Target:  5'- -cCGCGCccGGGGAGGgGCgCGcgGCGCc -3'
miRNA:   3'- cuGUGCG--UCCUUCCgCG-GCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 75571 0.71 0.452538
Target:  5'- cGGgGCGCuGGgcGGCGgCGcgGCGCUc -3'
miRNA:   3'- -CUgUGCGuCCuuCCGCgGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 75481 0.7 0.537485
Target:  5'- cGGCgGCGCGGGccgcuacgagcgcGGGGCGCUGGagGCGCa -3'
miRNA:   3'- -CUG-UGCGUCC-------------UUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74918 0.7 0.518817
Target:  5'- cGCGCGgGGGAGGGCGaggacggggaCUGcgGCGCg -3'
miRNA:   3'- cUGUGCgUCCUUCCGC----------GGCuaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.