miRNA display CGI


Results 101 - 120 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 52986 0.7 0.509095
Target:  5'- cGGCAgGCGGGGGcGGCGCCcagGCGUc -3'
miRNA:   3'- -CUGUgCGUCCUU-CCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 87887 0.7 0.509095
Target:  5'- aGAgGCGCGGaGAGGGCggGCCGG-GCGUa -3'
miRNA:   3'- -CUgUGCGUC-CUUCCG--CGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 131755 0.7 0.509095
Target:  5'- cGGCACGCcGGccGGCGCgGcggGCGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCua-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 126939 0.7 0.509095
Target:  5'- --aGCGCGGccaGGGGCGCCGG-GCGCg -3'
miRNA:   3'- cugUGCGUCc--UUCCGCGGCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 130633 0.7 0.509095
Target:  5'- aGCGCGCGGGgcGcGCgugcgcucGCCGAcGCGCUg -3'
miRNA:   3'- cUGUGCGUCCuuC-CG--------CGGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 132900 0.71 0.471025
Target:  5'- gGGCGcCGCGGGc-GGCGCCGAgcgGCgGCUc -3'
miRNA:   3'- -CUGU-GCGUCCuuCCGCGGCUa--CG-CGA- -5'
23794 3' -58.8 NC_005261.1 + 4391 0.71 0.461733
Target:  5'- cGCACGCGgccGGgcGGCGgCGgcGCGCUg -3'
miRNA:   3'- cUGUGCGU---CCuuCCGCgGCuaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 38311 0.72 0.425571
Target:  5'- aGCGCGCAGGgcGGC-CCGAUGgUGUUc -3'
miRNA:   3'- cUGUGCGUCCuuCCGcGGCUAC-GCGA- -5'
23794 3' -58.8 NC_005261.1 + 44266 0.72 0.425571
Target:  5'- cGGCGCGCGGGggGGCGgggcCCGccGCcaGCg -3'
miRNA:   3'- -CUGUGCGUCCuuCCGC----GGCuaCG--CGa -5'
23794 3' -58.8 NC_005261.1 + 69230 0.72 0.425571
Target:  5'- uGCGCGCuGGGgcGGUucGCCGAgGCGCUg -3'
miRNA:   3'- cUGUGCG-UCCuuCCG--CGGCUaCGCGA- -5'
23794 3' -58.8 NC_005261.1 + 46808 0.72 0.425571
Target:  5'- cGGCGCGCGcGGAuGGCGCgCGccagGCGCg -3'
miRNA:   3'- -CUGUGCGU-CCUuCCGCG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 58796 0.71 0.434455
Target:  5'- cGCGCGCAGGAAGGCcgGCaCGcgccGCGCc -3'
miRNA:   3'- cUGUGCGUCCUUCCG--CG-GCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 74501 0.71 0.434455
Target:  5'- cGGCGCucuuCGGGgcGGCGCCGGggccaugGCGCUu -3'
miRNA:   3'- -CUGUGc---GUCCuuCCGCGGCUa------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 13652 0.71 0.438038
Target:  5'- cGCGCGCcgugccgccgccgcgGGGggGGCGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCG---------------UCCuuCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 68594 0.71 0.443445
Target:  5'- gGGC-CGCGGGAGcGGgGCCGAcgGCGUg -3'
miRNA:   3'- -CUGuGCGUCCUU-CCgCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 103869 0.71 0.443445
Target:  5'- cGGCG-GCGGGgcGGCGCCGccgggcgGCGCg -3'
miRNA:   3'- -CUGUgCGUCCuuCCGCGGCua-----CGCGa -5'
23794 3' -58.8 NC_005261.1 + 30137 0.71 0.44707
Target:  5'- cGACGCGguGGAGcgcgcgcgccuuagcGGCGCCGcgcccgccGCGCUg -3'
miRNA:   3'- -CUGUGCguCCUU---------------CCGCGGCua------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 62518 0.71 0.452538
Target:  5'- ---cUGCAGGAAGGCGCC---GCGCg -3'
miRNA:   3'- cuguGCGUCCUUCCGCGGcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 125342 0.71 0.452538
Target:  5'- aGCGCGCAGGGcguccagcAGGCuccGCCGGgcagagggGCGCUg -3'
miRNA:   3'- cUGUGCGUCCU--------UCCG---CGGCUa-------CGCGA- -5'
23794 3' -58.8 NC_005261.1 + 75571 0.71 0.452538
Target:  5'- cGGgGCGCuGGgcGGCGgCGcgGCGCUc -3'
miRNA:   3'- -CUgUGCGuCCuuCCGCgGCuaCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.