miRNA display CGI


Results 41 - 60 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 3' -58.8 NC_005261.1 + 87423 0.75 0.279174
Target:  5'- gGGCGCGcCGGcGAAGGCGCCGAagccgaaGCGCc -3'
miRNA:   3'- -CUGUGC-GUC-CUUCCGCGGCUa------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 1842 0.76 0.253973
Target:  5'- cGGCGCGCGcGAAGGCGCCGGgcccgaagacGCGCc -3'
miRNA:   3'- -CUGUGCGUcCUUCCGCGGCUa---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 127634 0.76 0.236322
Target:  5'- gGACGCGaCGGcGgcGGCGCCGGgggGCGCg -3'
miRNA:   3'- -CUGUGC-GUC-CuuCCGCGGCUa--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 43783 0.76 0.235182
Target:  5'- cGGCGCGC-GGAGGGCGCCGcgggugaggggGCGCc -3'
miRNA:   3'- -CUGUGCGuCCUUCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 99555 0.78 0.183881
Target:  5'- cGGCGCGcCAGGAAGGCGUCGuagcucugggccUGCGCg -3'
miRNA:   3'- -CUGUGC-GUCCUUCCGCGGCu-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 45942 0.74 0.327986
Target:  5'- cGCGCGCgAGGGccgccaGGGCGCCGuugagcAUGCGCg -3'
miRNA:   3'- cUGUGCG-UCCU------UCCGCGGC------UACGCGa -5'
23794 3' -58.8 NC_005261.1 + 94261 0.73 0.349207
Target:  5'- --gGCGCAGGgcGGCGCCGcgaggcucuugGCGCa -3'
miRNA:   3'- cugUGCGUCCuuCCGCGGCua---------CGCGa -5'
23794 3' -58.8 NC_005261.1 + 5541 0.72 0.407274
Target:  5'- cGGCGCGCAgcgagacGGggGGCGCcCGAgcgGCGg- -3'
miRNA:   3'- -CUGUGCGU-------CCuuCCGCG-GCUa--CGCga -5'
23794 3' -58.8 NC_005261.1 + 105121 0.72 0.39115
Target:  5'- -cCGCGCGGGcgcGGGcCGCCGgcGCGCg -3'
miRNA:   3'- cuGUGCGUCCu--UCC-GCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 124245 0.72 0.382832
Target:  5'- cGC-CGCGGGcAGGCGCCGcgcgGCGCc -3'
miRNA:   3'- cUGuGCGUCCuUCCGCGGCua--CGCGa -5'
23794 3' -58.8 NC_005261.1 + 70217 0.72 0.382832
Target:  5'- gGGCAUGCuGGAGuuGGCGCCGc-GCGCa -3'
miRNA:   3'- -CUGUGCGuCCUU--CCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 31417 0.72 0.382832
Target:  5'- cGACcCGCugcccGGGGAGGCGCUGGcgGCGCc -3'
miRNA:   3'- -CUGuGCG-----UCCUUCCGCGGCUa-CGCGa -5'
23794 3' -58.8 NC_005261.1 + 137757 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 59023 0.73 0.374634
Target:  5'- cGGCGcCGcCAGGAacGGGUGCCGccGCGCg -3'
miRNA:   3'- -CUGU-GC-GUCCU--UCCGCGGCuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 74 0.73 0.374634
Target:  5'- cGCGCGCGGGGgcgGGGUGCgGG-GCGCg -3'
miRNA:   3'- cUGUGCGUCCU---UCCGCGgCUaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 110531 0.73 0.366554
Target:  5'- cGGgGCGCAGGAGGGCGC----GCGCa -3'
miRNA:   3'- -CUgUGCGUCCUUCCGCGgcuaCGCGa -5'
23794 3' -58.8 NC_005261.1 + 58292 0.73 0.358596
Target:  5'- cGGCGCGCcGGggGGCGCgGGgaggGgGCg -3'
miRNA:   3'- -CUGUGCGuCCuuCCGCGgCUa---CgCGa -5'
23794 3' -58.8 NC_005261.1 + 71468 0.73 0.358596
Target:  5'- aGCAU-CAGGAAGGCcucCCGGUGCGCg -3'
miRNA:   3'- cUGUGcGUCCUUCCGc--GGCUACGCGa -5'
23794 3' -58.8 NC_005261.1 + 119988 0.73 0.350759
Target:  5'- cGGCcgACGCuGGAGGGCGCCGGcuacgcggccgUGUGCc -3'
miRNA:   3'- -CUG--UGCGuCCUUCCGCGGCU-----------ACGCGa -5'
23794 3' -58.8 NC_005261.1 + 83353 0.73 0.350759
Target:  5'- uGGCcCGCAGGAAGGCGUccacgucggCGA-GCGCg -3'
miRNA:   3'- -CUGuGCGUCCUUCCGCG---------GCUaCGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.