Results 21 - 40 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 3' | -58.8 | NC_005261.1 | + | 33054 | 0.66 | 0.749451 |
Target: 5'- --gGC-CAGGAcucGGCGCCGGggacgcgGCGCUg -3' miRNA: 3'- cugUGcGUCCUu--CCGCGGCUa------CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 116494 | 0.66 | 0.749451 |
Target: 5'- gGGCGCGCGGuauaAAGaGCGCCGccgcggcgGCGCg -3' miRNA: 3'- -CUGUGCGUCc---UUC-CGCGGCua------CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 60826 | 0.66 | 0.749451 |
Target: 5'- -uCAUGCAGGAGaucaucggcGGCGgCGAggucGCGCg -3' miRNA: 3'- cuGUGCGUCCUU---------CCGCgGCUa---CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 69514 | 0.66 | 0.749451 |
Target: 5'- cGGCGgGCugccGGAgcuggcgcGGGCGCUGgcGCGCg -3' miRNA: 3'- -CUGUgCGu---CCU--------UCCGCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 56173 | 0.66 | 0.749451 |
Target: 5'- gGGCcCGCGGGGAGGa--CGAcGCGCg -3' miRNA: 3'- -CUGuGCGUCCUUCCgcgGCUaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 134546 | 0.66 | 0.749451 |
Target: 5'- aGACGugaccgccccuUGCuGGgcGGCGCCGcggcUGCGCa -3' miRNA: 3'- -CUGU-----------GCGuCCuuCCGCGGCu---ACGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 107744 | 0.66 | 0.749451 |
Target: 5'- cGGC-CGCGGGggGGgccaCGCCccaGCGCUc -3' miRNA: 3'- -CUGuGCGUCCuuCC----GCGGcuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 95708 | 0.66 | 0.749451 |
Target: 5'- uGCGCGCGGGcucgcgcucGGGC-CCGccGCGCUc -3' miRNA: 3'- cUGUGCGUCCu--------UCCGcGGCuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 136479 | 0.66 | 0.748489 |
Target: 5'- cGCGCGCGGGcAGcagcgagcagcucGGCGCCGAcGCcuGCUc -3' miRNA: 3'- cUGUGCGUCC-UU-------------CCGCGGCUaCG--CGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 38914 | 0.66 | 0.743664 |
Target: 5'- cGGCGCGCGGGcccgcgcgccaagccGgcggccGGGCggGCCGcgGCGCg -3' miRNA: 3'- -CUGUGCGUCC---------------U------UCCG--CGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 2533 | 0.66 | 0.739786 |
Target: 5'- cGGCA-GUAGGccGccaGCGCCGcgGCGCUg -3' miRNA: 3'- -CUGUgCGUCCuuC---CGCGGCuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 31627 | 0.66 | 0.739786 |
Target: 5'- cGCgACGCGGGAccuGGCcuuCCGcgGCGCg -3' miRNA: 3'- cUG-UGCGUCCUu--CCGc--GGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 98734 | 0.66 | 0.739786 |
Target: 5'- gGGCACGCGGccgcgcGGGCGuuGGccGCGCg -3' miRNA: 3'- -CUGUGCGUCcu----UCCGCggCUa-CGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 29865 | 0.66 | 0.739786 |
Target: 5'- -cCGCGCGGcGccGGCGCCGcUGcCGCc -3' miRNA: 3'- cuGUGCGUC-CuuCCGCGGCuAC-GCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 66918 | 0.66 | 0.739786 |
Target: 5'- -gUACGUgcccAGGAGGGCGUCGAagGCGg- -3' miRNA: 3'- cuGUGCG----UCCUUCCGCGGCUa-CGCga -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 87476 | 0.66 | 0.739786 |
Target: 5'- cGCGCGuCAGGuucGGCGCgGccGUGCUg -3' miRNA: 3'- cUGUGC-GUCCuu-CCGCGgCuaCGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 104038 | 0.66 | 0.739786 |
Target: 5'- -cCGCGCAGGAAGuacUGCCGcaGCGCc -3' miRNA: 3'- cuGUGCGUCCUUCc--GCGGCuaCGCGa -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 36648 | 0.66 | 0.739786 |
Target: 5'- cGGCGCGCGGGcuuGGGGCcagggucgaacGCUGGggcgGUGCUg -3' miRNA: 3'- -CUGUGCGUCC---UUCCG-----------CGGCUa---CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 106566 | 0.66 | 0.739786 |
Target: 5'- cGGCGCGCGccGGccccGGGGcCGCCGcgcgGCGCUc -3' miRNA: 3'- -CUGUGCGU--CC----UUCC-GCGGCua--CGCGA- -5' |
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23794 | 3' | -58.8 | NC_005261.1 | + | 97633 | 0.66 | 0.739786 |
Target: 5'- aGCGgGCGGaGcGGGCGCgGGUGcCGCa -3' miRNA: 3'- cUGUgCGUC-CuUCCGCGgCUAC-GCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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