miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 134566 0.67 0.886447
Target:  5'- -gGGCGGCGcCGCgGCUGCGcAGgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGgCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 134484 0.67 0.892802
Target:  5'- -gGGCGGCGUCGUCGCgcugcugCACuacGAGcACa -3'
miRNA:   3'- aaUCGUCGCAGCGGCG-------GUGu--UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 12177 0.67 0.886447
Target:  5'- -aGGcCAGCGcCGCCGCCACc------ -3'
miRNA:   3'- aaUC-GUCGCaGCGGCGGUGuuucaug -5'
23794 5' -53.8 NC_005261.1 + 94059 0.67 0.890706
Target:  5'- -cAGCGGCGccgggagcagaacCGCCGCCGCcGGGaACg -3'
miRNA:   3'- aaUCGUCGCa------------GCGGCGGUGuUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 83597 0.67 0.879154
Target:  5'- -cAGCAgcGCGUCGCucucCGCCGCGgcGUGg -3'
miRNA:   3'- aaUCGU--CGCAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 101781 0.67 0.906841
Target:  5'- -cAGCGcGCGU-GCCGCCcgGCGGGGcUGCg -3'
miRNA:   3'- aaUCGU-CGCAgCGGCGG--UGUUUC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 131836 0.67 0.886447
Target:  5'- --cGCGGCGccCGCCuGCUGCGGGGUGu -3'
miRNA:   3'- aauCGUCGCa-GCGG-CGGUGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 99729 0.67 0.879154
Target:  5'- gUGGCcGCGUCaggcgcguGCCGCCACAcGGccaGCa -3'
miRNA:   3'- aAUCGuCGCAG--------CGGCGGUGUuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 16394 0.67 0.906841
Target:  5'- --cGCcGuCGUCGUCGCCGgGcGGUGCg -3'
miRNA:   3'- aauCGuC-GCAGCGGCGGUgUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 75589 0.67 0.902944
Target:  5'- --cGCGGCGcucgCGCgCGCCGCGGAcgcggacggcgucgcGUACg -3'
miRNA:   3'- aauCGUCGCa---GCG-GCGGUGUUU---------------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 103377 0.67 0.900295
Target:  5'- -cGGCcGCG-CGCCGCCGCGccGcgGCc -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUuuCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 109350 0.67 0.879154
Target:  5'- -cGGCcGCGUCGCCguccaGCCGCucGAGcGCg -3'
miRNA:   3'- aaUCGuCGCAGCGG-----CGGUGu-UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 135233 0.67 0.879154
Target:  5'- -gAGC-GCGUCGCCGCCGuCuu--UGCg -3'
miRNA:   3'- aaUCGuCGCAGCGGCGGU-GuuucAUG- -5'
23794 5' -53.8 NC_005261.1 + 90582 0.67 0.879154
Target:  5'- -aAGCAGCag-GCCGCCAuCAAGGUc- -3'
miRNA:   3'- aaUCGUCGcagCGGCGGU-GUUUCAug -5'
23794 5' -53.8 NC_005261.1 + 108452 0.67 0.906841
Target:  5'- -gAGCAGCG-CGUCGUCgGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGCaGCGGCGG-UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 127812 0.67 0.886447
Target:  5'- -cGGCGGCGggccgcucgcgcUCGCgGCCGCGAGcaGCg -3'
miRNA:   3'- aaUCGUCGC------------AGCGgCGGUGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 12337 0.67 0.906841
Target:  5'- cUUGGcCGGCGcggcCGCCGCCGCGGcg-GCa -3'
miRNA:   3'- -AAUC-GUCGCa---GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 59530 0.67 0.886447
Target:  5'- -gAGCAGCccCGCCGCCACcgcGcGCg -3'
miRNA:   3'- aaUCGUCGcaGCGGCGGUGuuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 87114 0.67 0.879154
Target:  5'- --cGCGGCGUUGUagaaggGCCGC-GGGUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-----CGGUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 12805 0.67 0.885729
Target:  5'- --cGuCGGCGUCGCUGCCguccuccGCGAAGg-- -3'
miRNA:   3'- aauC-GUCGCAGCGGCGG-------UGUUUCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.