miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 16394 0.67 0.906841
Target:  5'- --cGCcGuCGUCGUCGCCGgGcGGUGCg -3'
miRNA:   3'- aauCGuC-GCAGCGGCGGUgUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 103377 0.67 0.900295
Target:  5'- -cGGCcGCG-CGCCGCCGCGccGcgGCc -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUuuCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 134484 0.67 0.892802
Target:  5'- -gGGCGGCGUCGUCGCgcugcugCACuacGAGcACa -3'
miRNA:   3'- aaUCGUCGCAGCGGCG-------GUGu--UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 107183 0.67 0.893496
Target:  5'- -cGGCGGCGUagcccugcaGCCGC-GCGAAGgcgGCg -3'
miRNA:   3'- aaUCGUCGCAg--------CGGCGgUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 13860 0.67 0.900295
Target:  5'- --cGcCGGCGUCGCCGgCgGCccggucguacagGAAGUACa -3'
miRNA:   3'- aauC-GUCGCAGCGGC-GgUG------------UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 99856 0.67 0.900295
Target:  5'- -cGGCAccggccgccgcGCGcCGCCGCCGCucGGcGCg -3'
miRNA:   3'- aaUCGU-----------CGCaGCGGCGGUGuuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 31059 0.67 0.890706
Target:  5'- --cGCGGCGggaGCCGCCGCugcccgcccgcGUGCu -3'
miRNA:   3'- aauCGUCGCag-CGGCGGUGuuu--------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 35557 0.67 0.893496
Target:  5'- -cGGCGGCGgcagcaGCCGCCGCGc----- -3'
miRNA:   3'- aaUCGUCGCag----CGGCGGUGUuucaug -5'
23794 5' -53.8 NC_005261.1 + 44024 0.67 0.906841
Target:  5'- --cGCGGCGggcgGCCGCCGCGcGGcgGCc -3'
miRNA:   3'- aauCGUCGCag--CGGCGGUGUuUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 75589 0.67 0.902944
Target:  5'- --cGCGGCGcucgCGCgCGCCGCGGAcgcggacggcgucgcGUACg -3'
miRNA:   3'- aauCGUCGCa---GCG-GCGGUGUUU---------------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 108452 0.67 0.906841
Target:  5'- -gAGCAGCG-CGUCGUCgGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGCaGCGGCGG-UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 12337 0.67 0.906841
Target:  5'- cUUGGcCGGCGcggcCGCCGCCGCGGcg-GCa -3'
miRNA:   3'- -AAUC-GUCGCa---GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 124423 0.67 0.893496
Target:  5'- aUGGCcugcuucaucGCG-CGCCGCCACAccagccggggccGGGUGCc -3'
miRNA:   3'- aAUCGu---------CGCaGCGGCGGUGU------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 94059 0.67 0.890706
Target:  5'- -cAGCGGCGccgggagcagaacCGCCGCCGCcGGGaACg -3'
miRNA:   3'- aaUCGUCGCa------------GCGGCGGUGuUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 98018 0.67 0.900295
Target:  5'- cUGGCGGCGagGCuggagaCGCCGC--GGUACu -3'
miRNA:   3'- aAUCGUCGCagCG------GCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 28848 0.68 0.830587
Target:  5'- -aGGCGGcCGUCgugGCCGCCGCccuuGAGGcUGCg -3'
miRNA:   3'- aaUCGUC-GCAG---CGGCGGUG----UUUC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 123841 0.68 0.859085
Target:  5'- --uGCAGCGUCGCgcugccuagcggcaGCCGCuc-GUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-------------CGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 120308 0.68 0.863855
Target:  5'- -gGGCGGCGagGCUGUCuGCGAGGcGCg -3'
miRNA:   3'- aaUCGUCGCagCGGCGG-UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 138077 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 406 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.