miRNA display CGI


Results 101 - 120 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 60345 0.68 0.847647
Target:  5'- --uGCGGCGcCGCgGCCGCGcgccaggcAGUGCu -3'
miRNA:   3'- aauCGUCGCaGCGgCGGUGUu-------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 11126 0.68 0.863855
Target:  5'- -cGGCAGCGUgCGCCGCCu-------- -3'
miRNA:   3'- aaUCGUCGCA-GCGGCGGuguuucaug -5'
23794 5' -53.8 NC_005261.1 + 87944 0.68 0.871621
Target:  5'- -gAGCcGCG-CGCCGCCACGGc---- -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUUucaug -5'
23794 5' -53.8 NC_005261.1 + 32394 0.68 0.847647
Target:  5'- -cGGCGGCGUCccggagcgcguGCCGCCGCcggcgACg -3'
miRNA:   3'- aaUCGUCGCAG-----------CGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 114349 0.68 0.874663
Target:  5'- -gAGCGgcGCGUgGCCGCgGCcgagucgguggccgaGAAGUACg -3'
miRNA:   3'- aaUCGU--CGCAgCGGCGgUG---------------UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 104877 0.68 0.871621
Target:  5'- aUGuCAGCGUCGaUCGCCGCcgcGUGCg -3'
miRNA:   3'- aAUcGUCGCAGC-GGCGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100702 0.68 0.871621
Target:  5'- --cGCGGCGcgCGCCGCC-CGAGccGCg -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGuGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 116196 0.68 0.871621
Target:  5'- -gGGC-GCGUCGCCGCa--GAAGcGCu -3'
miRNA:   3'- aaUCGuCGCAGCGGCGgugUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 122511 0.68 0.863855
Target:  5'- -gGGCucucaaccauGGgGUCGCCagGCCGCAuguAGUACa -3'
miRNA:   3'- aaUCG----------UCgCAGCGG--CGGUGUu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 121417 0.68 0.863855
Target:  5'- -cGGCuGcCGcCGCCGCUACGGGGcgGCg -3'
miRNA:   3'- aaUCGuC-GCaGCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 108740 0.68 0.863855
Target:  5'- -cAGCGGCGgCGCCGCgGCGuccgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGgUGUuuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 64922 0.68 0.863855
Target:  5'- --cGCGGCGugcuccugcUCGCCGCC-CAGGG-GCg -3'
miRNA:   3'- aauCGUCGC---------AGCGGCGGuGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 46129 0.68 0.863855
Target:  5'- -cAGCAG-GUCGCCGCC-CGAGa--- -3'
miRNA:   3'- aaUCGUCgCAGCGGCGGuGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 65549 0.68 0.855861
Target:  5'- -cAGCAGCGcgUGCCaggcguCCAUGAAGUGCc -3'
miRNA:   3'- aaUCGUCGCa-GCGGc-----GGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 110295 0.69 0.821759
Target:  5'- cUGGCGGgCGccugCGCCGCCG---AGUACg -3'
miRNA:   3'- aAUCGUC-GCa---GCGGCGGUguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 107935 0.69 0.821759
Target:  5'- --cGCGGa-UCGCCGCCACGuaguccGUGCg -3'
miRNA:   3'- aauCGUCgcAGCGGCGGUGUuu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 63750 0.69 0.821759
Target:  5'- -cGGCGGCGUagGCCGCCGuguagcccacgcCGAGGUccACg -3'
miRNA:   3'- aaUCGUCGCAg-CGGCGGU------------GUUUCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 116825 0.69 0.821759
Target:  5'- -gAGCAGguguacguggcCGUCcCCGCCGCGAAGUuCa -3'
miRNA:   3'- aaUCGUC-----------GCAGcGGCGGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 121465 0.69 0.812742
Target:  5'- aUGGCgagcuccucGGCGUaccggcUGCCGCCACGGGGcgGCg -3'
miRNA:   3'- aAUCG---------UCGCA------GCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 133477 0.69 0.812742
Target:  5'- -cAGCAGUG-CuUCGCCACcAAGUGCg -3'
miRNA:   3'- aaUCGUCGCaGcGGCGGUGuUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.