miRNA display CGI


Results 121 - 140 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 72961 0.69 0.78466
Target:  5'- -cGGCucGCGccCGCCGCCGCGGGGguccGCg -3'
miRNA:   3'- aaUCGu-CGCa-GCGGCGGUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 59053 0.69 0.78466
Target:  5'- -gAGCucAGCGcgCGCgGCCGCGGAGaGCg -3'
miRNA:   3'- aaUCG--UCGCa-GCGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 36000 0.69 0.78466
Target:  5'- cUGGCGGCGguaaUCGCCGCgGCcAAGg-- -3'
miRNA:   3'- aAUCGUCGC----AGCGGCGgUGuUUCaug -5'
23794 5' -53.8 NC_005261.1 + 68574 0.69 0.794183
Target:  5'- -gAGC-GCGUCGCCGCCgagGCGGGccGCg -3'
miRNA:   3'- aaUCGuCGCAGCGGCGG---UGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 99353 0.69 0.794183
Target:  5'- -cAGCAGCG-CGCaCGUgACGAGGUccaGCg -3'
miRNA:   3'- aaUCGUCGCaGCG-GCGgUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 4840 0.69 0.794183
Target:  5'- -cGGCGGCGUccgCGCCGCagccuCAAGGgcgGCg -3'
miRNA:   3'- aaUCGUCGCA---GCGGCGgu---GUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 77563 0.69 0.821759
Target:  5'- --cGcCAGUGgCGCCGCCGCGcccuggcaccccGGGUACg -3'
miRNA:   3'- aauC-GUCGCaGCGGCGGUGU------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 63750 0.69 0.821759
Target:  5'- -cGGCGGCGUagGCCGCCGuguagcccacgcCGAGGUccACg -3'
miRNA:   3'- aaUCGUCGCAg-CGGCGGU------------GUUUCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 116825 0.69 0.821759
Target:  5'- -gAGCAGguguacguggcCGUCcCCGCCGCGAAGUuCa -3'
miRNA:   3'- aaUCGUC-----------GCAGcGGCGGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 121465 0.69 0.812742
Target:  5'- aUGGCgagcuccucGGCGUaccggcUGCCGCCACGGGGcgGCg -3'
miRNA:   3'- aAUCG---------UCGCA------GCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 133477 0.69 0.812742
Target:  5'- -cAGCAGUG-CuUCGCCACcAAGUGCg -3'
miRNA:   3'- aaUCGUCGCaGcGGCGGUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 80669 0.69 0.812742
Target:  5'- --cGCGGUGcgCGCCGUCGCGGAGc-- -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 76153 0.69 0.812742
Target:  5'- gUGGCGGCGcacgaCGCCGUgGCGcugcAGUACg -3'
miRNA:   3'- aAUCGUCGCa----GCGGCGgUGUu---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 42607 0.69 0.812742
Target:  5'- -aGGCAGC-UCGCgCGgCGCAAAGUccaGCg -3'
miRNA:   3'- aaUCGUCGcAGCG-GCgGUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 22813 0.69 0.812742
Target:  5'- -cGGCGGCGcugcCGCCGCCGCcguugGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 124230 0.69 0.812742
Target:  5'- -cAGCAGCccaacCGCCGCCGCGGGcagGCg -3'
miRNA:   3'- aaUCGUCGca---GCGGCGGUGUUUca-UG- -5'
23794 5' -53.8 NC_005261.1 + 104014 0.69 0.811831
Target:  5'- aUGGCGcgcgcgcuguacuGCG-CGCCGCgCAgGAAGUACu -3'
miRNA:   3'- aAUCGU-------------CGCaGCGGCG-GUgUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 78850 0.69 0.803548
Target:  5'- -cGGCGGCGccCGCCGCCG--GAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUguUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 3851 0.69 0.803548
Target:  5'- -cAGCGGCGcCGgCGCCGCGcGGccgGCg -3'
miRNA:   3'- aaUCGUCGCaGCgGCGGUGUuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 73369 0.69 0.797949
Target:  5'- -aGGCGGCGccagcagCGCgGCCACGcgcgcgugcagcaccAGGUACg -3'
miRNA:   3'- aaUCGUCGCa------GCGgCGGUGU---------------UUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.