miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 87681 0.71 0.723718
Target:  5'- -cAGCGGUgaGUCGCagcuccgCGCCGCAAgcAGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCG-------GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 12198 0.71 0.724749
Target:  5'- --uGCAGCGcCGCCGCC----GGUGCc -3'
miRNA:   3'- aauCGUCGCaGCGGCGGuguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 108799 0.71 0.728865
Target:  5'- gUUGGCAGCGUgCGCCagggcgcugagccccGCCugGAAGaaggGCa -3'
miRNA:   3'- -AAUCGUCGCA-GCGG---------------CGGugUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 138223 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 59566 0.71 0.703972
Target:  5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3'
miRNA:   3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 13656 0.71 0.672336
Target:  5'- --cGCcGUGcCGCCGCCGCGGGGgggGCg -3'
miRNA:   3'- aauCGuCGCaGCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 55240 0.71 0.682931
Target:  5'- -cGGCAGCaccgcaGCCGCCGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGcag---CGGCGGUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 70502 0.71 0.682931
Target:  5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3'
miRNA:   3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 44981 0.71 0.693479
Target:  5'- -gGGCccgGGCGg-GCCGCCACA-GGUGCu -3'
miRNA:   3'- aaUCG---UCGCagCGGCGGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 58163 0.71 0.693479
Target:  5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3'
miRNA:   3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 13113 0.71 0.693479
Target:  5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3'
miRNA:   3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 51986 0.71 0.693479
Target:  5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 104824 0.71 0.702925
Target:  5'- -cAGCGGCGUCGCggggccgCGCCACGcGG-ACc -3'
miRNA:   3'- aaUCGUCGCAGCG-------GCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 16053 0.71 0.703972
Target:  5'- -gGGCAGCGggcccgCGCCgaGCCggcgcguguagACGAAGUACg -3'
miRNA:   3'- aaUCGUCGCa-----GCGG--CGG-----------UGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 27451 0.71 0.703972
Target:  5'- uUUGGCGGCGg-GCCGCCccGCGGGGcggGCa -3'
miRNA:   3'- -AAUCGUCGCagCGGCGG--UGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 552 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 63061 0.7 0.754236
Target:  5'- -cAGCGccGCGUCGCUGgCGCAcagcggcGGGUACg -3'
miRNA:   3'- aaUCGU--CGCAGCGGCgGUGU-------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 973 0.7 0.745179
Target:  5'- -gAGCGGCGg-GCCGCgCGCAGAGc-- -3'
miRNA:   3'- aaUCGUCGCagCGGCG-GUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 118415 0.7 0.735012
Target:  5'- --cGCAGCcgcgcuggcuGUCGCCGCCGCGGAc--- -3'
miRNA:   3'- aauCGUCG----------CAGCGGCGGUGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 49258 0.7 0.755237
Target:  5'- -cGGCGGCGUCGgCGCgCACGuccgcGAGgaagGCg -3'
miRNA:   3'- aaUCGUCGCAGCgGCG-GUGU-----UUCa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.