miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 33083 0.7 0.774988
Target:  5'- cUGGCGGC--CGCCGCCACAuccccUGCg -3'
miRNA:   3'- aAUCGUCGcaGCGGCGGUGUuuc--AUG- -5'
23794 5' -53.8 NC_005261.1 + 59019 0.7 0.774988
Target:  5'- ---cCAGCGgCGCCGCCAgGAacgGGUGCc -3'
miRNA:   3'- aaucGUCGCaGCGGCGGUgUU---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 81428 0.7 0.774988
Target:  5'- -aGGCGGCGUCGUCGgCCGCcccgcgGCg -3'
miRNA:   3'- aaUCGUCGCAGCGGC-GGUGuuuca-UG- -5'
23794 5' -53.8 NC_005261.1 + 122257 0.7 0.774988
Target:  5'- -gGGcCAGCGcCGCCGCCGuCAGGGc-- -3'
miRNA:   3'- aaUC-GUCGCaGCGGCGGU-GUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 132076 0.7 0.774988
Target:  5'- --cGCGGCcgccGUCGCCgcuGCCGCGGAGgGCg -3'
miRNA:   3'- aauCGUCG----CAGCGG---CGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 133164 0.7 0.774988
Target:  5'- --cGuCGGCGUCGCCGCCgACAAccgcgGCg -3'
miRNA:   3'- aauC-GUCGCAGCGGCGG-UGUUuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 70594 0.7 0.765177
Target:  5'- -cAGCGGCGUgCGcCCGCC-CGAAGa-- -3'
miRNA:   3'- aaUCGUCGCA-GC-GGCGGuGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 19036 0.7 0.765177
Target:  5'- -gGGCAGcCGgagaGCCGCCAggcaGGGGUACg -3'
miRNA:   3'- aaUCGUC-GCag--CGGCGGUg---UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 56115 0.7 0.735012
Target:  5'- -gAGCGGCGggaGCgCGCCGCAGGGcgggggGCg -3'
miRNA:   3'- aaUCGUCGCag-CG-GCGGUGUUUCa-----UG- -5'
23794 5' -53.8 NC_005261.1 + 118415 0.7 0.735012
Target:  5'- --cGCAGCcgcgcuggcuGUCGCCGCCGCGGAc--- -3'
miRNA:   3'- aauCGUCG----------CAGCGGCGGUGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 973 0.7 0.745179
Target:  5'- -gAGCGGCGg-GCCGCgCGCAGAGc-- -3'
miRNA:   3'- aaUCGUCGCagCGGCG-GUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 63061 0.7 0.754236
Target:  5'- -cAGCGccGCGUCGCUGgCGCAcagcggcGGGUACg -3'
miRNA:   3'- aaUCGU--CGCAGCGGCgGUGU-------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 49258 0.7 0.755237
Target:  5'- -cGGCGGCGUCGgCGCgCACGuccgcGAGgaagGCg -3'
miRNA:   3'- aaUCGUCGCAGCgGCG-GUGU-----UUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 67515 0.7 0.755237
Target:  5'- -aGGcCAGCGUCGCCGCgGCGcccgcgGCg -3'
miRNA:   3'- aaUC-GUCGCAGCGGCGgUGUuuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 108020 0.7 0.755237
Target:  5'- -cAGCAGCGgcaGCaCGuCCGCGuAGUACg -3'
miRNA:   3'- aaUCGUCGCag-CG-GC-GGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 124320 0.7 0.755237
Target:  5'- -cAGCAGCG-CGuCCGCCAaAAAGaGCa -3'
miRNA:   3'- aaUCGUCGCaGC-GGCGGUgUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 30159 0.7 0.755237
Target:  5'- cUUAGCGGCGccgCGcCCGCCGCGcuGcGCg -3'
miRNA:   3'- -AAUCGUCGCa--GC-GGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 15586 0.7 0.764188
Target:  5'- gUAGCaugacgaAGCaGUCGCCGUCgACGAGGUAg -3'
miRNA:   3'- aAUCG-------UCG-CAGCGGCGG-UGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 58718 0.69 0.78466
Target:  5'- -gAGguGCGccacCGCCGCCGCGcaGAGcGCg -3'
miRNA:   3'- aaUCguCGCa---GCGGCGGUGU--UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 93109 0.69 0.78466
Target:  5'- --cGCGcGCGUCGUCGCCGgAAAaUGCg -3'
miRNA:   3'- aauCGU-CGCAGCGGCGGUgUUUcAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.