miRNA display CGI


Results 41 - 60 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 138223 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 59566 0.71 0.703972
Target:  5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3'
miRNA:   3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 552 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 27451 0.71 0.703972
Target:  5'- uUUGGCGGCGg-GCCGCCccGCGGGGcggGCa -3'
miRNA:   3'- -AAUCGUCGCagCGGCGG--UGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 16053 0.71 0.703972
Target:  5'- -gGGCAGCGggcccgCGCCgaGCCggcgcguguagACGAAGUACg -3'
miRNA:   3'- aaUCGUCGCa-----GCGG--CGG-----------UGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 105167 0.71 0.713359
Target:  5'- -gGGCGGCGUccacggggcccgcCGCCGCCGCGGcagGCu -3'
miRNA:   3'- aaUCGUCGCA-------------GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 102005 0.71 0.714398
Target:  5'- gUAGUGGCGcagcUCGCCGCCGCccGAGGccGCg -3'
miRNA:   3'- aAUCGUCGC----AGCGGCGGUG--UUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 49593 0.71 0.714398
Target:  5'- -gGGCGcGCGgCGCUGCUGuCAAAGUACa -3'
miRNA:   3'- aaUCGU-CGCaGCGGCGGU-GUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 28200 0.71 0.714398
Target:  5'- -cGGCGGCcUCGCCGCCGCugcc-GCg -3'
miRNA:   3'- aaUCGUCGcAGCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 23212 0.71 0.714398
Target:  5'- --cGCAGCGgcgGCCGCgCGCAAaagccGGUGCa -3'
miRNA:   3'- aauCGUCGCag-CGGCG-GUGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 80129 0.71 0.714398
Target:  5'- -cGGCAGCGgcggCGCCGCUACcaccgGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 64606 0.71 0.714398
Target:  5'- -cAGCAGC--CGCCGCgCGCGAAGgccgGCa -3'
miRNA:   3'- aaUCGUCGcaGCGGCG-GUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 3433 0.71 0.718548
Target:  5'- -gGGcCAGCGUCcaggcgggcgcgcggGCCGCCGCGccgcgcgucGAGUACc -3'
miRNA:   3'- aaUC-GUCGCAG---------------CGGCGGUGU---------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 87681 0.71 0.723718
Target:  5'- -cAGCGGUgaGUCGCagcuccgCGCCGCAAgcAGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCG-------GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 12198 0.71 0.724749
Target:  5'- --uGCAGCGcCGCCGCC----GGUGCc -3'
miRNA:   3'- aauCGUCGCaGCGGCGGuguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 108799 0.71 0.728865
Target:  5'- gUUGGCAGCGUgCGCCagggcgcugagccccGCCugGAAGaaggGCa -3'
miRNA:   3'- -AAUCGUCGCA-GCGG---------------CGGugUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 56115 0.7 0.735012
Target:  5'- -gAGCGGCGggaGCgCGCCGCAGGGcgggggGCg -3'
miRNA:   3'- aaUCGUCGCag-CG-GCGGUGUUUCa-----UG- -5'
23794 5' -53.8 NC_005261.1 + 118415 0.7 0.735012
Target:  5'- --cGCAGCcgcgcuggcuGUCGCCGCCGCGGAc--- -3'
miRNA:   3'- aauCGUCG----------CAGCGGCGGUGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 973 0.7 0.745179
Target:  5'- -gAGCGGCGg-GCCGCgCGCAGAGc-- -3'
miRNA:   3'- aaUCGUCGCagCGGCG-GUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 63061 0.7 0.754236
Target:  5'- -cAGCGccGCGUCGCUGgCGCAcagcggcGGGUACg -3'
miRNA:   3'- aaUCGU--CGCAGCGGCgGUGU-------UUCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.