Results 81 - 100 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 36000 | 0.69 | 0.78466 |
Target: 5'- cUGGCGGCGguaaUCGCCGCgGCcAAGg-- -3' miRNA: 3'- aAUCGUCGC----AGCGGCGgUGuUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93109 | 0.69 | 0.78466 |
Target: 5'- --cGCGcGCGUCGUCGCCGgAAAaUGCg -3' miRNA: 3'- aauCGU-CGCAGCGGCGGUgUUUcAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 58718 | 0.69 | 0.78466 |
Target: 5'- -gAGguGCGccacCGCCGCCGCGcaGAGcGCg -3' miRNA: 3'- aaUCguCGCa---GCGGCGGUGU--UUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 54001 | 0.69 | 0.78466 |
Target: 5'- --cGCGGCGcacaggCGCCGCCGCGAGc--- -3' miRNA: 3'- aauCGUCGCa-----GCGGCGGUGUUUcaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 98849 | 0.69 | 0.793238 |
Target: 5'- -cAGCGG-GUCGCCGCUugcggcgGCGAAGUcCg -3' miRNA: 3'- aaUCGUCgCAGCGGCGG-------UGUUUCAuG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 77157 | 0.69 | 0.794183 |
Target: 5'- -----cGCGcCGCCGCCGCGAGGcggGCa -3' miRNA: 3'- aaucguCGCaGCGGCGGUGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 4840 | 0.69 | 0.794183 |
Target: 5'- -cGGCGGCGUccgCGCCGCagccuCAAGGgcgGCg -3' miRNA: 3'- aaUCGUCGCA---GCGGCGgu---GUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 99353 | 0.69 | 0.794183 |
Target: 5'- -cAGCAGCG-CGCaCGUgACGAGGUccaGCg -3' miRNA: 3'- aaUCGUCGCaGCG-GCGgUGUUUCA---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 68574 | 0.69 | 0.794183 |
Target: 5'- -gAGC-GCGUCGCCGCCgagGCGGGccGCg -3' miRNA: 3'- aaUCGuCGCAGCGGCGG---UGUUUcaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 46060 | 0.69 | 0.794183 |
Target: 5'- -gGGCAGCGggaagggCGCCGCCucguggccggacACGAGcacGUACg -3' miRNA: 3'- aaUCGUCGCa------GCGGCGG------------UGUUU---CAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 15803 | 0.69 | 0.794183 |
Target: 5'- --cGCGGCcagCGCCGCCACccaGAAGaGCa -3' miRNA: 3'- aauCGUCGca-GCGGCGGUG---UUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 1528 | 0.69 | 0.794183 |
Target: 5'- -cAGCuccAGCGcgCGCCGCcCGCAggccAGGUACa -3' miRNA: 3'- aaUCG---UCGCa-GCGGCG-GUGU----UUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 73369 | 0.69 | 0.797949 |
Target: 5'- -aGGCGGCGccagcagCGCgGCCACGcgcgcgugcagcaccAGGUACg -3' miRNA: 3'- aaUCGUCGCa------GCGgCGGUGU---------------UUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 3851 | 0.69 | 0.803548 |
Target: 5'- -cAGCGGCGcCGgCGCCGCGcGGccgGCg -3' miRNA: 3'- aaUCGUCGCaGCgGCGGUGUuUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 78850 | 0.69 | 0.803548 |
Target: 5'- -cGGCGGCGccCGCCGCCG--GAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUguUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 104014 | 0.69 | 0.811831 |
Target: 5'- aUGGCGcgcgcgcuguacuGCG-CGCCGCgCAgGAAGUACu -3' miRNA: 3'- aAUCGU-------------CGCaGCGGCG-GUgUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 22813 | 0.69 | 0.812742 |
Target: 5'- -cGGCGGCGcugcCGCCGCCGCcguugGCg -3' miRNA: 3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 42607 | 0.69 | 0.812742 |
Target: 5'- -aGGCAGC-UCGCgCGgCGCAAAGUccaGCg -3' miRNA: 3'- aaUCGUCGcAGCG-GCgGUGUUUCA---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 76153 | 0.69 | 0.812742 |
Target: 5'- gUGGCGGCGcacgaCGCCGUgGCGcugcAGUACg -3' miRNA: 3'- aAUCGUCGCa----GCGGCGgUGUu---UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 80669 | 0.69 | 0.812742 |
Target: 5'- --cGCGGUGcgCGCCGUCGCGGAGc-- -3' miRNA: 3'- aauCGUCGCa-GCGGCGGUGUUUCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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