miRNA display CGI


Results 101 - 120 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 42607 0.69 0.812742
Target:  5'- -aGGCAGC-UCGCgCGgCGCAAAGUccaGCg -3'
miRNA:   3'- aaUCGUCGcAGCG-GCgGUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 22813 0.69 0.812742
Target:  5'- -cGGCGGCGcugcCGCCGCCGCcguugGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 124230 0.69 0.812742
Target:  5'- -cAGCAGCccaacCGCCGCCGCGGGcagGCg -3'
miRNA:   3'- aaUCGUCGca---GCGGCGGUGUUUca-UG- -5'
23794 5' -53.8 NC_005261.1 + 110295 0.69 0.821759
Target:  5'- cUGGCGGgCGccugCGCCGCCG---AGUACg -3'
miRNA:   3'- aAUCGUC-GCa---GCGGCGGUguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 107935 0.69 0.821759
Target:  5'- --cGCGGa-UCGCCGCCACGuaguccGUGCg -3'
miRNA:   3'- aauCGUCgcAGCGGCGGUGUuu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 77563 0.69 0.821759
Target:  5'- --cGcCAGUGgCGCCGCCGCGcccuggcaccccGGGUACg -3'
miRNA:   3'- aauC-GUCGCaGCGGCGGUGU------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 63750 0.69 0.821759
Target:  5'- -cGGCGGCGUagGCCGCCGuguagcccacgcCGAGGUccACg -3'
miRNA:   3'- aaUCGUCGCAg-CGGCGGU------------GUUUCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 116825 0.69 0.821759
Target:  5'- -gAGCAGguguacguggcCGUCcCCGCCGCGAAGUuCa -3'
miRNA:   3'- aaUCGUC-----------GCAGcGGCGGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 406 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 138077 0.68 0.829713
Target:  5'- -cGGCAGCGguccuggUC-CCGCgACGGGGUGCc -3'
miRNA:   3'- aaUCGUCGC-------AGcGGCGgUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100594 0.68 0.830587
Target:  5'- -cAGgAGCGcCGCCacgcgGCCGCGcAGGUGCa -3'
miRNA:   3'- aaUCgUCGCaGCGG-----CGGUGU-UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 79845 0.68 0.830587
Target:  5'- --cGCAGCGcuaGCCGCCGCGcugGGGUugaGCu -3'
miRNA:   3'- aauCGUCGCag-CGGCGGUGU---UUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 64082 0.68 0.830587
Target:  5'- -cGGUGGCGUaguaguUGgCGcCCACAAAGUGCg -3'
miRNA:   3'- aaUCGUCGCA------GCgGC-GGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 37572 0.68 0.830587
Target:  5'- -gGGguGCGUC-CUGCCGCcccGGUACc -3'
miRNA:   3'- aaUCguCGCAGcGGCGGUGuu-UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 31439 0.68 0.830587
Target:  5'- cUGGCGGCGcCGCC-CgGCGAGG-ACg -3'
miRNA:   3'- aAUCGUCGCaGCGGcGgUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 28848 0.68 0.830587
Target:  5'- -aGGCGGcCGUCgugGCCGCCGCccuuGAGGcUGCg -3'
miRNA:   3'- aaUCGUC-GCAG---CGGCGGUG----UUUC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 131879 0.68 0.839219
Target:  5'- cUGGCGGC--CGCCGCCGCAcgcgACg -3'
miRNA:   3'- aAUCGUCGcaGCGGCGGUGUuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 55798 0.68 0.839219
Target:  5'- --cGCGGCGcgcggccuUCGCCGCCGUAAAG-GCg -3'
miRNA:   3'- aauCGUCGC--------AGCGGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 70537 0.68 0.839219
Target:  5'- -cGGCGGCGcccgCGCCccacccGCCGCAGGGcGCc -3'
miRNA:   3'- aaUCGUCGCa---GCGG------CGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 128841 0.68 0.839219
Target:  5'- --cGCGGC-UgGCCGCCAC--GGUGCc -3'
miRNA:   3'- aauCGUCGcAgCGGCGGUGuuUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.