miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 50017 0.67 0.886447
Target:  5'- -cAGCGcGCGggcgcccaGCCGCCGCGcgacGGUGCa -3'
miRNA:   3'- aaUCGU-CGCag------CGGCGGUGUu---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 131836 0.67 0.886447
Target:  5'- --cGCGGCGccCGCCuGCUGCGGGGUGu -3'
miRNA:   3'- aauCGUCGCa-GCGG-CGGUGUUUCAUg -5'
23794 5' -53.8 NC_005261.1 + 50787 0.67 0.886447
Target:  5'- -cGGCGGCGgccgccccggCGCCGCCGCcaug-ACg -3'
miRNA:   3'- aaUCGUCGCa---------GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 134566 0.67 0.886447
Target:  5'- -gGGCGGCGcCGCgGCUGCGcAGgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGgCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 59530 0.67 0.886447
Target:  5'- -gAGCAGCccCGCCGCCACcgcGcGCg -3'
miRNA:   3'- aaUCGUCGcaGCGGCGGUGuuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 127812 0.67 0.886447
Target:  5'- -cGGCGGCGggccgcucgcgcUCGCgGCCGCGAGcaGCg -3'
miRNA:   3'- aaUCGUCGC------------AGCGgCGGUGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 59807 0.67 0.886447
Target:  5'- -aGGcCGGCGUgG-CGCCGCGuguAGUGCa -3'
miRNA:   3'- aaUC-GUCGCAgCgGCGGUGUu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 12805 0.67 0.885729
Target:  5'- --cGuCGGCGUCGCUGCCguccuccGCGAAGg-- -3'
miRNA:   3'- aauC-GUCGCAGCGGCGG-------UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 43170 0.67 0.879154
Target:  5'- --cGCGGCGcgauacggCGCCGCCgGCGAggcagagguGGUGCg -3'
miRNA:   3'- aauCGUCGCa-------GCGGCGG-UGUU---------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 83597 0.67 0.879154
Target:  5'- -cAGCAgcGCGUCGCucucCGCCGCGgcGUGg -3'
miRNA:   3'- aaUCGU--CGCAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 90582 0.67 0.879154
Target:  5'- -aAGCAGCag-GCCGCCAuCAAGGUc- -3'
miRNA:   3'- aaUCGUCGcagCGGCGGU-GUUUCAug -5'
23794 5' -53.8 NC_005261.1 + 135233 0.67 0.879154
Target:  5'- -gAGC-GCGUCGCCGCCGuCuu--UGCg -3'
miRNA:   3'- aaUCGuCGCAGCGGCGGU-GuuucAUG- -5'
23794 5' -53.8 NC_005261.1 + 87114 0.67 0.879154
Target:  5'- --cGCGGCGUUGUagaaggGCCGC-GGGUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-----CGGUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 109350 0.67 0.879154
Target:  5'- -cGGCcGCGUCGCCguccaGCCGCucGAGcGCg -3'
miRNA:   3'- aaUCGuCGCAGCGG-----CGGUGu-UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 99729 0.67 0.879154
Target:  5'- gUGGCcGCGUCaggcgcguGCCGCCACAcGGccaGCa -3'
miRNA:   3'- aAUCGuCGCAG--------CGGCGGUGUuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 114349 0.68 0.874663
Target:  5'- -gAGCGgcGCGUgGCCGCgGCcgagucgguggccgaGAAGUACg -3'
miRNA:   3'- aaUCGU--CGCAgCGGCGgUG---------------UUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 116196 0.68 0.871621
Target:  5'- -gGGC-GCGUCGCCGCa--GAAGcGCu -3'
miRNA:   3'- aaUCGuCGCAGCGGCGgugUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 104877 0.68 0.871621
Target:  5'- aUGuCAGCGUCGaUCGCCGCcgcGUGCg -3'
miRNA:   3'- aAUcGUCGCAGC-GGCGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100702 0.68 0.871621
Target:  5'- --cGCGGCGcgCGCCGCC-CGAGccGCg -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGuGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 87944 0.68 0.871621
Target:  5'- -gAGCcGCG-CGCCGCCACGGc---- -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUUucaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.