miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 108740 0.68 0.863855
Target:  5'- -cAGCGGCGgCGCCGCgGCGuccgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGgUGUuuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 120308 0.68 0.863855
Target:  5'- -gGGCGGCGagGCUGUCuGCGAGGcGCg -3'
miRNA:   3'- aaUCGUCGCagCGGCGG-UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 11126 0.68 0.863855
Target:  5'- -cGGCAGCGUgCGCCGCCu-------- -3'
miRNA:   3'- aaUCGUCGCA-GCGGCGGuguuucaug -5'
23794 5' -53.8 NC_005261.1 + 46129 0.68 0.863855
Target:  5'- -cAGCAG-GUCGCCGCC-CGAGa--- -3'
miRNA:   3'- aaUCGUCgCAGCGGCGGuGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 64922 0.68 0.863855
Target:  5'- --cGCGGCGugcuccugcUCGCCGCC-CAGGG-GCg -3'
miRNA:   3'- aauCGUCGC---------AGCGGCGGuGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 121417 0.68 0.863855
Target:  5'- -cGGCuGcCGcCGCCGCUACGGGGcgGCg -3'
miRNA:   3'- aaUCGuC-GCaGCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 122511 0.68 0.863855
Target:  5'- -gGGCucucaaccauGGgGUCGCCagGCCGCAuguAGUACa -3'
miRNA:   3'- aaUCG----------UCgCAGCGG--CGGUGUu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 123841 0.68 0.859085
Target:  5'- --uGCAGCGUCGCgcugccuagcggcaGCCGCuc-GUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-------------CGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 65549 0.68 0.855861
Target:  5'- -cAGCAGCGcgUGCCaggcguCCAUGAAGUGCc -3'
miRNA:   3'- aaUCGUCGCa-GCGGc-----GGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 31187 0.68 0.855861
Target:  5'- cUGGCGGCcuacUGCCGCCcCGAGGUcGCg -3'
miRNA:   3'- aAUCGUCGca--GCGGCGGuGUUUCA-UG- -5'
23794 5' -53.8 NC_005261.1 + 83685 0.68 0.855861
Target:  5'- --cGCAGCG-CGCCGCCG--AGGcgGCg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGUguUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 100057 0.68 0.855861
Target:  5'- -gAGC-GCGcCGCCGCCGCccGGggGCg -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGuuUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 43418 0.68 0.855861
Target:  5'- -gGGCGGCcucCGCCGCCgGCGGGGaGCu -3'
miRNA:   3'- aaUCGUCGca-GCGGCGG-UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 132649 0.68 0.855861
Target:  5'- --cGCGGCGgcccuaGCgGCCGCGuguGGGUGCg -3'
miRNA:   3'- aauCGUCGCag----CGgCGGUGU---UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 1594 0.68 0.850958
Target:  5'- gUUGGCGGCGcgguggcuggccgccUCGCCcuCCGCGAAGUcCg -3'
miRNA:   3'- -AAUCGUCGC---------------AGCGGc-GGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 32394 0.68 0.847647
Target:  5'- -cGGCGGCGUCccggagcgcguGCCGCCGCcggcgACg -3'
miRNA:   3'- aaUCGUCGCAG-----------CGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 60345 0.68 0.847647
Target:  5'- --uGCGGCGcCGCgGCCGCGcgccaggcAGUGCu -3'
miRNA:   3'- aauCGUCGCaGCGgCGGUGUu-------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 73160 0.68 0.847647
Target:  5'- -aGGCGGCGUUGuuGCUcggccggggGgAGGGUGCa -3'
miRNA:   3'- aaUCGUCGCAGCggCGG---------UgUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 124862 0.68 0.847647
Target:  5'- --uGCGGCGUCGUCGCCuuCGucGUc- -3'
miRNA:   3'- aauCGUCGCAGCGGCGGu-GUuuCAug -5'
23794 5' -53.8 NC_005261.1 + 108512 0.68 0.847647
Target:  5'- --cGCGGCcaCGCCGCgCACGAAGg-- -3'
miRNA:   3'- aauCGUCGcaGCGGCG-GUGUUUCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.