miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 27578 0.73 0.608356
Target:  5'- -gAGCAcCGUCGCCGCCGacu-GUACc -3'
miRNA:   3'- aaUCGUcGCAGCGGCGGUguuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 28200 0.71 0.714398
Target:  5'- -cGGCGGCcUCGCCGCCGCugcc-GCg -3'
miRNA:   3'- aaUCGUCGcAGCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 28804 0.66 0.919164
Target:  5'- --cGCGGCGgaggcaGCCGCCGcCGAAGccgagGCg -3'
miRNA:   3'- aauCGUCGCag----CGGCGGU-GUUUCa----UG- -5'
23794 5' -53.8 NC_005261.1 + 28848 0.68 0.830587
Target:  5'- -aGGCGGcCGUCgugGCCGCCGCccuuGAGGcUGCg -3'
miRNA:   3'- aaUCGUC-GCAG---CGGCGGUG----UUUC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 29313 0.74 0.499983
Target:  5'- -cGGCAGCG-CGCCGCCGCcgcccggccgcGUGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGuuu--------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 30159 0.7 0.755237
Target:  5'- cUUAGCGGCGccgCGcCCGCCGCGcuGcGCg -3'
miRNA:   3'- -AAUCGUCGCa--GC-GGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 31059 0.67 0.890706
Target:  5'- --cGCGGCGggaGCCGCCGCugcccgcccgcGUGCu -3'
miRNA:   3'- aauCGUCGCag-CGGCGGUGuuu--------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 31187 0.68 0.855861
Target:  5'- cUGGCGGCcuacUGCCGCCcCGAGGUcGCg -3'
miRNA:   3'- aAUCGUCGca--GCGGCGGuGUUUCA-UG- -5'
23794 5' -53.8 NC_005261.1 + 31297 0.66 0.93045
Target:  5'- --cGCGGCc-CGCCGCCGCGcGGgGCc -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 31439 0.68 0.830587
Target:  5'- cUGGCGGCGcCGCC-CgGCGAGG-ACg -3'
miRNA:   3'- aAUCGUCGCaGCGGcGgUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 31995 0.72 0.6297
Target:  5'- --cGCGGUGcccgUGCCGCCGCGcGAGUACc -3'
miRNA:   3'- aauCGUCGCa---GCGGCGGUGU-UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 32023 0.68 0.839219
Target:  5'- -cGGCAGCGcgUGCUGCCGCGGcucgACg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUGUUuca-UG- -5'
23794 5' -53.8 NC_005261.1 + 32149 0.66 0.93045
Target:  5'- -gGGCucGGCG-CGCCGCUGCGGccgguGUACc -3'
miRNA:   3'- aaUCG--UCGCaGCGGCGGUGUUu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 32267 0.66 0.924937
Target:  5'- --cGCAcGCcgaggCGCCGCCGCu-GGUGCu -3'
miRNA:   3'- aauCGU-CGca---GCGGCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 32394 0.68 0.847647
Target:  5'- -cGGCGGCGUCccggagcgcguGCCGCCGCcggcgACg -3'
miRNA:   3'- aaUCGUCGCAG-----------CGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 33083 0.7 0.774988
Target:  5'- cUGGCGGC--CGCCGCCACAuccccUGCg -3'
miRNA:   3'- aAUCGUCGcaGCGGCGGUGUuuc--AUG- -5'
23794 5' -53.8 NC_005261.1 + 33465 0.66 0.935702
Target:  5'- --cGCAGC--CGCCGCCGCAGccGGg-- -3'
miRNA:   3'- aauCGUCGcaGCGGCGGUGUU--UCaug -5'
23794 5' -53.8 NC_005261.1 + 35557 0.67 0.893496
Target:  5'- -cGGCGGCGgcagcaGCCGCCGCGc----- -3'
miRNA:   3'- aaUCGUCGCag----CGGCGGUGUuucaug -5'
23794 5' -53.8 NC_005261.1 + 35850 0.66 0.928823
Target:  5'- -aGGCGGCGcaccgaaauggaggUgGCCGCCu--GGGUGCg -3'
miRNA:   3'- aaUCGUCGC--------------AgCGGCGGuguUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 36000 0.69 0.78466
Target:  5'- cUGGCGGCGguaaUCGCCGCgGCcAAGg-- -3'
miRNA:   3'- aAUCGUCGC----AGCGGCGgUGuUUCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.