miRNA display CGI


Results 61 - 80 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 37360 0.75 0.464381
Target:  5'- -gGGCGGUGcUCGCCGCC-CGAGGcgGCg -3'
miRNA:   3'- aaUCGUCGC-AGCGGCGGuGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 37572 0.68 0.830587
Target:  5'- -gGGguGCGUC-CUGCCGCcccGGUACc -3'
miRNA:   3'- aaUCguCGCAGcGGCGGUGuu-UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 42607 0.69 0.812742
Target:  5'- -aGGCAGC-UCGCgCGgCGCAAAGUccaGCg -3'
miRNA:   3'- aaUCGUCGcAGCG-GCgGUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 43170 0.67 0.879154
Target:  5'- --cGCGGCGcgauacggCGCCGCCgGCGAggcagagguGGUGCg -3'
miRNA:   3'- aauCGUCGCa-------GCGGCGG-UGUU---------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 43418 0.68 0.855861
Target:  5'- -gGGCGGCcucCGCCGCCgGCGGGGaGCu -3'
miRNA:   3'- aaUCGUCGca-GCGGCGG-UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 44024 0.67 0.906841
Target:  5'- --cGCGGCGggcgGCCGCCGCGcGGcgGCc -3'
miRNA:   3'- aauCGUCGCag--CGGCGGUGUuUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 44981 0.71 0.693479
Target:  5'- -gGGCccgGGCGg-GCCGCCACA-GGUGCu -3'
miRNA:   3'- aaUCG---UCGCagCGGCGGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 46060 0.69 0.794183
Target:  5'- -gGGCAGCGggaagggCGCCGCCucguggccggacACGAGcacGUACg -3'
miRNA:   3'- aaUCGUCGCa------GCGGCGG------------UGUUU---CAUG- -5'
23794 5' -53.8 NC_005261.1 + 46129 0.68 0.863855
Target:  5'- -cAGCAG-GUCGCCGCC-CGAGa--- -3'
miRNA:   3'- aaUCGUCgCAGCGGCGGuGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 46992 0.75 0.464381
Target:  5'- -cGGCAGCGcgcgccgCGCCGCCGCGA--UGCg -3'
miRNA:   3'- aaUCGUCGCa------GCGGCGGUGUUucAUG- -5'
23794 5' -53.8 NC_005261.1 + 47396 0.68 0.847647
Target:  5'- -gGGCGGCGcCGCCccccguGCaCACGcGGUACu -3'
miRNA:   3'- aaUCGUCGCaGCGG------CG-GUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 49258 0.7 0.755237
Target:  5'- -cGGCGGCGUCGgCGCgCACGuccgcGAGgaagGCg -3'
miRNA:   3'- aaUCGUCGCAGCgGCG-GUGU-----UUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 49593 0.71 0.714398
Target:  5'- -gGGCGcGCGgCGCUGCUGuCAAAGUACa -3'
miRNA:   3'- aaUCGU-CGCaGCGGCGGU-GUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 50017 0.67 0.886447
Target:  5'- -cAGCGcGCGggcgcccaGCCGCCGCGcgacGGUGCa -3'
miRNA:   3'- aaUCGU-CGCag------CGGCGGUGUu---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 50410 0.67 0.900295
Target:  5'- -cGGCAgccccGCGUCGCggaGCCGCuc-GUGCa -3'
miRNA:   3'- aaUCGU-----CGCAGCGg--CGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 50787 0.67 0.886447
Target:  5'- -cGGCGGCGgccgccccggCGCCGCCGCcaug-ACg -3'
miRNA:   3'- aaUCGUCGCa---------GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 51986 0.71 0.693479
Target:  5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 53113 0.72 0.651051
Target:  5'- --cGCGGCGcugcgCGCCGCCaACAGGGcgGCg -3'
miRNA:   3'- aauCGUCGCa----GCGGCGG-UGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 54001 0.69 0.78466
Target:  5'- --cGCGGCGcacaggCGCCGCCGCGAGc--- -3'
miRNA:   3'- aauCGUCGCa-----GCGGCGGUGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 55240 0.71 0.682931
Target:  5'- -cGGCAGCaccgcaGCCGCCGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGcag---CGGCGGUGUUUCaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.