miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 55798 0.68 0.839219
Target:  5'- --cGCGGCGcgcggccuUCGCCGCCGUAAAG-GCg -3'
miRNA:   3'- aauCGUCGC--------AGCGGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 56115 0.7 0.735012
Target:  5'- -gAGCGGCGggaGCgCGCCGCAGGGcgggggGCg -3'
miRNA:   3'- aaUCGUCGCag-CG-GCGGUGUUUCa-----UG- -5'
23794 5' -53.8 NC_005261.1 + 58163 0.71 0.693479
Target:  5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3'
miRNA:   3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 58718 0.69 0.78466
Target:  5'- -gAGguGCGccacCGCCGCCGCGcaGAGcGCg -3'
miRNA:   3'- aaUCguCGCa---GCGGCGGUGU--UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 59019 0.7 0.774988
Target:  5'- ---cCAGCGgCGCCGCCAgGAacgGGUGCc -3'
miRNA:   3'- aaucGUCGCaGCGGCGGUgUU---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 59053 0.69 0.78466
Target:  5'- -gAGCucAGCGcgCGCgGCCGCGGAGaGCg -3'
miRNA:   3'- aaUCG--UCGCa-GCGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 59278 0.72 0.661707
Target:  5'- -cGGC-GUGUCGCCGCCcaGCAGcgcgcAGUGCc -3'
miRNA:   3'- aaUCGuCGCAGCGGCGG--UGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 59530 0.67 0.886447
Target:  5'- -gAGCAGCccCGCCGCCACcgcGcGCg -3'
miRNA:   3'- aaUCGUCGcaGCGGCGGUGuuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 59566 0.71 0.703972
Target:  5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3'
miRNA:   3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 59807 0.67 0.886447
Target:  5'- -aGGcCGGCGUgG-CGCCGCGuguAGUGCa -3'
miRNA:   3'- aaUC-GUCGCAgCgGCGGUGUu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 60345 0.68 0.847647
Target:  5'- --uGCGGCGcCGCgGCCGCGcgccaggcAGUGCu -3'
miRNA:   3'- aauCGUCGCaGCGgCGGUGUu-------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 63061 0.7 0.754236
Target:  5'- -cAGCGccGCGUCGCUGgCGCAcagcggcGGGUACg -3'
miRNA:   3'- aaUCGU--CGCAGCGGCgGUGU-------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 63750 0.69 0.821759
Target:  5'- -cGGCGGCGUagGCCGCCGuguagcccacgcCGAGGUccACg -3'
miRNA:   3'- aaUCGUCGCAg-CGGCGGU------------GUUUCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 64082 0.68 0.830587
Target:  5'- -cGGUGGCGUaguaguUGgCGcCCACAAAGUGCg -3'
miRNA:   3'- aaUCGUCGCA------GCgGC-GGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 64606 0.71 0.714398
Target:  5'- -cAGCAGC--CGCCGCgCGCGAAGgccgGCa -3'
miRNA:   3'- aaUCGUCGcaGCGGCG-GUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 64769 0.66 0.935702
Target:  5'- -cGGcCAGC-UCGCggcgCGCCACGAcGUGCg -3'
miRNA:   3'- aaUC-GUCGcAGCG----GCGGUGUUuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 64922 0.68 0.863855
Target:  5'- --cGCGGCGugcuccugcUCGCCGCC-CAGGG-GCg -3'
miRNA:   3'- aauCGUCGC---------AGCGGCGGuGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 65549 0.68 0.855861
Target:  5'- -cAGCAGCGcgUGCCaggcguCCAUGAAGUGCc -3'
miRNA:   3'- aaUCGUCGCa-GCGGc-----GGUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 66448 0.65 0.938729
Target:  5'- --cGCGGCGcgCGCCGCCGgucccgcCAGgcgcgcguccucgcGGUACa -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGU-------GUU--------------UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 67372 0.74 0.524376
Target:  5'- -cGGCAGCGcCaCCGCCGCGAAG-ACc -3'
miRNA:   3'- aaUCGUCGCaGcGGCGGUGUUUCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.