miRNA display CGI


Results 101 - 120 of 222 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 67423 0.67 0.900295
Target:  5'- -cAGCAGCGccCGCgGCCAgcgccCAAAGgGCa -3'
miRNA:   3'- aaUCGUCGCa-GCGgCGGU-----GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 67515 0.7 0.755237
Target:  5'- -aGGcCAGCGUCGCCGCgGCGcccgcgGCg -3'
miRNA:   3'- aaUC-GUCGCAGCGGCGgUGUuuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 67992 0.74 0.545042
Target:  5'- --cGCAGCGUCGUCGCgCACAAcggGGUc- -3'
miRNA:   3'- aauCGUCGCAGCGGCG-GUGUU---UCAug -5'
23794 5' -53.8 NC_005261.1 + 68574 0.69 0.794183
Target:  5'- -gAGC-GCGUCGCCGCCgagGCGGGccGCg -3'
miRNA:   3'- aaUCGuCGCAGCGGCGG---UGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 70502 0.71 0.682931
Target:  5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3'
miRNA:   3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 70537 0.68 0.839219
Target:  5'- -cGGCGGCGcccgCGCCccacccGCCGCAGGGcGCc -3'
miRNA:   3'- aaUCGUCGCa---GCGG------CGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 70594 0.7 0.765177
Target:  5'- -cAGCGGCGUgCGcCCGCC-CGAAGa-- -3'
miRNA:   3'- aaUCGUCGCA-GC-GGCGGuGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 71994 0.66 0.919164
Target:  5'- --cGCAGCGUCGCCccugGCCuuaacgcCGGGGgcgACg -3'
miRNA:   3'- aauCGUCGCAGCGG----CGGu------GUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 72961 0.69 0.78466
Target:  5'- -cGGCucGCGccCGCCGCCGCGGGGguccGCg -3'
miRNA:   3'- aaUCGu-CGCa-GCGGCGGUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 73160 0.68 0.847647
Target:  5'- -aGGCGGCGUUGuuGCUcggccggggGgAGGGUGCa -3'
miRNA:   3'- aaUCGUCGCAGCggCGG---------UgUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 73369 0.69 0.797949
Target:  5'- -aGGCGGCGccagcagCGCgGCCACGcgcgcgugcagcaccAGGUACg -3'
miRNA:   3'- aaUCGUCGCa------GCGgCGGUGU---------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 74760 0.66 0.935702
Target:  5'- -cGGCAGCG-CGCCacaGgCGCGGAGgucgACg -3'
miRNA:   3'- aaUCGUCGCaGCGG---CgGUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 75481 0.66 0.924937
Target:  5'- -cGGCGGCGcggGCCGCUACGAgcgcGGgGCg -3'
miRNA:   3'- aaUCGUCGCag-CGGCGGUGUU----UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 75589 0.67 0.902944
Target:  5'- --cGCGGCGcucgCGCgCGCCGCGGAcgcggacggcgucgcGUACg -3'
miRNA:   3'- aauCGUCGCa---GCG-GCGGUGUUU---------------CAUG- -5'
23794 5' -53.8 NC_005261.1 + 76153 0.69 0.812742
Target:  5'- gUGGCGGCGcacgaCGCCGUgGCGcugcAGUACg -3'
miRNA:   3'- aAUCGUCGCa----GCGGCGgUGUu---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 77157 0.69 0.794183
Target:  5'- -----cGCGcCGCCGCCGCGAGGcggGCa -3'
miRNA:   3'- aaucguCGCaGCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 77563 0.69 0.821759
Target:  5'- --cGcCAGUGgCGCCGCCGCGcccuggcaccccGGGUACg -3'
miRNA:   3'- aauC-GUCGCaGCGGCGGUGU------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 78010 0.78 0.324541
Target:  5'- -cAGCAGCa--GCCGCCGCAGcAGUACg -3'
miRNA:   3'- aaUCGUCGcagCGGCGGUGUU-UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 78850 0.69 0.803548
Target:  5'- -cGGCGGCGccCGCCGCCG--GAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUguUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 79845 0.68 0.830587
Target:  5'- --cGCAGCGcuaGCCGCCGCGcugGGGUugaGCu -3'
miRNA:   3'- aauCGUCGCag-CGGCGGUGU---UUCA---UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.