Results 121 - 140 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 80129 | 0.71 | 0.714398 |
Target: 5'- -cGGCAGCGgcggCGCCGCUACcaccgGCg -3' miRNA: 3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 80669 | 0.69 | 0.812742 |
Target: 5'- --cGCGGUGcgCGCCGUCGCGGAGc-- -3' miRNA: 3'- aauCGUCGCa-GCGGCGGUGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 81428 | 0.7 | 0.774988 |
Target: 5'- -aGGCGGCGUCGUCGgCCGCcccgcgGCg -3' miRNA: 3'- aaUCGUCGCAGCGGC-GGUGuuuca-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 81506 | 0.67 | 0.900295 |
Target: 5'- --cGCGGCGcgcgCGCCGCCGCcg---GCg -3' miRNA: 3'- aauCGUCGCa---GCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 83597 | 0.67 | 0.879154 |
Target: 5'- -cAGCAgcGCGUCGCucucCGCCGCGgcGUGg -3' miRNA: 3'- aaUCGU--CGCAGCG----GCGGUGUuuCAUg -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 83685 | 0.68 | 0.855861 |
Target: 5'- --cGCAGCG-CGCCGCCG--AGGcgGCg -3' miRNA: 3'- aauCGUCGCaGCGGCGGUguUUCa-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 85547 | 0.66 | 0.913132 |
Target: 5'- -gGGCGGCuccgucugCGgCGCCGCGAGGUucgGCg -3' miRNA: 3'- aaUCGUCGca------GCgGCGGUGUUUCA---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 87114 | 0.67 | 0.879154 |
Target: 5'- --cGCGGCGUUGUagaaggGCCGC-GGGUACg -3' miRNA: 3'- aauCGUCGCAGCGg-----CGGUGuUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 87681 | 0.71 | 0.723718 |
Target: 5'- -cAGCGGUgaGUCGCagcuccgCGCCGCAAgcAGUGCg -3' miRNA: 3'- aaUCGUCG--CAGCG-------GCGGUGUU--UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 87944 | 0.68 | 0.871621 |
Target: 5'- -gAGCcGCG-CGCCGCCACGGc---- -3' miRNA: 3'- aaUCGuCGCaGCGGCGGUGUUucaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 88340 | 0.75 | 0.464381 |
Target: 5'- cUGGCGGCGcccCGCCGCCGCGgcGUucACa -3' miRNA: 3'- aAUCGUCGCa--GCGGCGGUGUuuCA--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 90582 | 0.67 | 0.879154 |
Target: 5'- -aAGCAGCag-GCCGCCAuCAAGGUc- -3' miRNA: 3'- aaUCGUCGcagCGGCGGU-GUUUCAug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 91424 | 0.67 | 0.893496 |
Target: 5'- -gAGC-GCGaCGCCGCCGCGGuGaACg -3' miRNA: 3'- aaUCGuCGCaGCGGCGGUGUUuCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93109 | 0.69 | 0.78466 |
Target: 5'- --cGCGcGCGUCGUCGCCGgAAAaUGCg -3' miRNA: 3'- aauCGU-CGCAGCGGCGGUgUUUcAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93480 | 0.74 | 0.524376 |
Target: 5'- -gGGCGcGCGUCGcCCGCgGCGAAGcGCg -3' miRNA: 3'- aaUCGU-CGCAGC-GGCGgUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 93841 | 0.73 | 0.58709 |
Target: 5'- -gGGCGGCGcCGCCGagcaguCCACGAGGcGCg -3' miRNA: 3'- aaUCGUCGCaGCGGC------GGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 94059 | 0.67 | 0.890706 |
Target: 5'- -cAGCGGCGccgggagcagaacCGCCGCCGCcGGGaACg -3' miRNA: 3'- aaUCGUCGCa------------GCGGCGGUGuUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 94191 | 0.73 | 0.597709 |
Target: 5'- --cGCGGUG-CGCgGCCAgGAAGUGCc -3' miRNA: 3'- aauCGUCGCaGCGgCGGUgUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 95036 | 0.72 | 0.661707 |
Target: 5'- -cGGCGGCGcUCGgCGCCGCAGAccGCc -3' miRNA: 3'- aaUCGUCGC-AGCgGCGGUGUUUcaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 95741 | 0.75 | 0.474141 |
Target: 5'- -cAGCGGCGcCGCCGCCGCcgccGGGgGCg -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGu---UUCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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