miRNA display CGI


Results 21 - 40 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 127812 0.67 0.886447
Target:  5'- -cGGCGGCGggccgcucgcgcUCGCgGCCGCGAGcaGCg -3'
miRNA:   3'- aaUCGUCGC------------AGCGgCGGUGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 127312 0.66 0.935702
Target:  5'- cUGGCGGUGgggcccUGCCGCCcGCGGGGgcCg -3'
miRNA:   3'- aAUCGUCGCa-----GCGGCGG-UGUUUCauG- -5'
23794 5' -53.8 NC_005261.1 + 125725 0.66 0.935702
Target:  5'- -gGGCucGGCuGggGCCGCCGCAAGGggGCc -3'
miRNA:   3'- aaUCG--UCG-CagCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 124862 0.68 0.847647
Target:  5'- --uGCGGCGUCGUCGCCuuCGucGUc- -3'
miRNA:   3'- aauCGUCGCAGCGGCGGu-GUuuCAug -5'
23794 5' -53.8 NC_005261.1 + 124423 0.67 0.893496
Target:  5'- aUGGCcugcuucaucGCG-CGCCGCCACAccagccggggccGGGUGCc -3'
miRNA:   3'- aAUCGu---------CGCaGCGGCGGUGU------------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 124320 0.7 0.755237
Target:  5'- -cAGCAGCG-CGuCCGCCAaAAAGaGCa -3'
miRNA:   3'- aaUCGUCGCaGC-GGCGGUgUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 124230 0.69 0.812742
Target:  5'- -cAGCAGCccaacCGCCGCCGCGGGcagGCg -3'
miRNA:   3'- aaUCGUCGca---GCGGCGGUGUUUca-UG- -5'
23794 5' -53.8 NC_005261.1 + 123841 0.68 0.859085
Target:  5'- --uGCAGCGUCGCgcugccuagcggcaGCCGCuc-GUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-------------CGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 123724 0.7 0.774988
Target:  5'- -cAGCAGCGUCGUCGCggucCGCAccgccAGUAg -3'
miRNA:   3'- aaUCGUCGCAGCGGCG----GUGUu----UCAUg -5'
23794 5' -53.8 NC_005261.1 + 122511 0.68 0.863855
Target:  5'- -gGGCucucaaccauGGgGUCGCCagGCCGCAuguAGUACa -3'
miRNA:   3'- aaUCG----------UCgCAGCGG--CGGUGUu--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 122257 0.7 0.774988
Target:  5'- -gGGcCAGCGcCGCCGCCGuCAGGGc-- -3'
miRNA:   3'- aaUC-GUCGCaGCGGCGGU-GUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 121465 0.69 0.812742
Target:  5'- aUGGCgagcuccucGGCGUaccggcUGCCGCCACGGGGcgGCg -3'
miRNA:   3'- aAUCG---------UCGCA------GCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 121417 0.68 0.863855
Target:  5'- -cGGCuGcCGcCGCCGCUACGGGGcgGCg -3'
miRNA:   3'- aaUCGuC-GCaGCGGCGGUGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 121391 0.7 0.774988
Target:  5'- -cGGCGGCGgCGCCuGCC-C-GAGUGCg -3'
miRNA:   3'- aaUCGUCGCaGCGG-CGGuGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 120308 0.68 0.863855
Target:  5'- -gGGCGGCGagGCUGUCuGCGAGGcGCg -3'
miRNA:   3'- aaUCGUCGCagCGGCGG-UGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 118582 0.76 0.417239
Target:  5'- -cGGCGGCGcgcgcCGCCGCCGCGGAGcucGCg -3'
miRNA:   3'- aaUCGUCGCa----GCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 118415 0.7 0.735012
Target:  5'- --cGCAGCcgcgcuggcuGUCGCCGCCGCGGAc--- -3'
miRNA:   3'- aauCGUCG----------CAGCGGCGGUGUUUcaug -5'
23794 5' -53.8 NC_005261.1 + 116825 0.69 0.821759
Target:  5'- -gAGCAGguguacguggcCGUCcCCGCCGCGAAGUuCa -3'
miRNA:   3'- aaUCGUC-----------GCAGcGGCGGUGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 116196 0.68 0.871621
Target:  5'- -gGGC-GCGUCGCCGCa--GAAGcGCu -3'
miRNA:   3'- aaUCGuCGCAGCGGCGgugUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 114349 0.68 0.874663
Target:  5'- -gAGCGgcGCGUgGCCGCgGCcgagucgguggccgaGAAGUACg -3'
miRNA:   3'- aaUCGU--CGCAgCGGCGgUG---------------UUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.