miRNA display CGI


Results 41 - 60 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 113569 0.66 0.919164
Target:  5'- -gAGCAGUggucgGUgGCCGCCGCGcuGgGCg -3'
miRNA:   3'- aaUCGUCG-----CAgCGGCGGUGUuuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 112078 0.66 0.913132
Target:  5'- --cGuCGGCGagGgCGCCACGuGGUGCg -3'
miRNA:   3'- aauC-GUCGCagCgGCGGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 110295 0.69 0.821759
Target:  5'- cUGGCGGgCGccugCGCCGCCG---AGUACg -3'
miRNA:   3'- aAUCGUC-GCa---GCGGCGGUguuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 109350 0.67 0.879154
Target:  5'- -cGGCcGCGUCGCCguccaGCCGCucGAGcGCg -3'
miRNA:   3'- aaUCGuCGCAGCGG-----CGGUGu-UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 108799 0.71 0.728865
Target:  5'- gUUGGCAGCGUgCGCCagggcgcugagccccGCCugGAAGaaggGCa -3'
miRNA:   3'- -AAUCGUCGCA-GCGG---------------CGGugUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 108740 0.68 0.863855
Target:  5'- -cAGCGGCGgCGCCGCgGCGuccgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGgUGUuuca--UG- -5'
23794 5' -53.8 NC_005261.1 + 108512 0.68 0.847647
Target:  5'- --cGCGGCcaCGCCGCgCACGAAGg-- -3'
miRNA:   3'- aauCGUCGcaGCGGCG-GUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 108452 0.67 0.906841
Target:  5'- -gAGCAGCG-CGUCGUCgGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGCaGCGGCGG-UGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 108020 0.7 0.755237
Target:  5'- -cAGCAGCGgcaGCaCGuCCGCGuAGUACg -3'
miRNA:   3'- aaUCGUCGCag-CG-GC-GGUGUuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 107935 0.69 0.821759
Target:  5'- --cGCGGa-UCGCCGCCACGuaguccGUGCg -3'
miRNA:   3'- aauCGUCgcAGCGGCGGUGUuu----CAUG- -5'
23794 5' -53.8 NC_005261.1 + 107726 0.66 0.93045
Target:  5'- -cGGCAgGCGgcugCGCCucgGCCGCGGGGgggGCc -3'
miRNA:   3'- aaUCGU-CGCa---GCGG---CGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 107678 0.72 0.651051
Target:  5'- --cGCcgGGCGUUGCCGCCGCGgcGgggGCg -3'
miRNA:   3'- aauCG--UCGCAGCGGCGGUGUuuCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 107183 0.67 0.893496
Target:  5'- -cGGCGGCGUagcccugcaGCCGC-GCGAAGgcgGCg -3'
miRNA:   3'- aaUCGUCGCAg--------CGGCGgUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 106110 0.66 0.924937
Target:  5'- -cGGcCGGCGUCGCCGgCGCGc----- -3'
miRNA:   3'- aaUC-GUCGCAGCGGCgGUGUuucaug -5'
23794 5' -53.8 NC_005261.1 + 105979 0.73 0.58709
Target:  5'- --cGCGGCGUcgaCGCCGCCcGCGAAGgcCa -3'
miRNA:   3'- aauCGUCGCA---GCGGCGG-UGUUUCauG- -5'
23794 5' -53.8 NC_005261.1 + 105167 0.71 0.713359
Target:  5'- -gGGCGGCGUccacggggcccgcCGCCGCCGCGGcagGCu -3'
miRNA:   3'- aaUCGUCGCA-------------GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 104877 0.68 0.871621
Target:  5'- aUGuCAGCGUCGaUCGCCGCcgcGUGCg -3'
miRNA:   3'- aAUcGUCGCAGC-GGCGGUGuuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 104824 0.71 0.702925
Target:  5'- -cAGCGGCGUCGCggggccgCGCCACGcGG-ACc -3'
miRNA:   3'- aaUCGUCGCAGCG-------GCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 104443 0.72 0.640379
Target:  5'- -gGGCccGCGUCGCCGCCGCcggcgGCg -3'
miRNA:   3'- aaUCGu-CGCAGCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 104014 0.69 0.811831
Target:  5'- aUGGCGcgcgcgcuguacuGCG-CGCCGCgCAgGAAGUACu -3'
miRNA:   3'- aAUCGU-------------CGCaGCGGCG-GUgUUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.