miRNA display CGI


Results 61 - 80 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 103965 0.66 0.913132
Target:  5'- --cGCGGCG--GCCGCCACAcggAAGcGCu -3'
miRNA:   3'- aauCGUCGCagCGGCGGUGU---UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 103869 0.7 0.765177
Target:  5'- -cGGCGGCGgggcggCGCCGCCGgGcGGcGCg -3'
miRNA:   3'- aaUCGUCGCa-----GCGGCGGUgUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 103377 0.67 0.900295
Target:  5'- -cGGCcGCG-CGCCGCCGCGccGcgGCc -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUuuCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 102935 0.74 0.514154
Target:  5'- --cGCAGCGcCGCCGCCGCugcGGcgGCg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGUGuu-UCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 102695 0.66 0.93045
Target:  5'- --cGCGGcCGUCGCUGCCGCc------ -3'
miRNA:   3'- aauCGUC-GCAGCGGCGGUGuuucaug -5'
23794 5' -53.8 NC_005261.1 + 102005 0.71 0.714398
Target:  5'- gUAGUGGCGcagcUCGCCGCCGCccGAGGccGCg -3'
miRNA:   3'- aAUCGUCGC----AGCGGCGGUG--UUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 101781 0.67 0.906841
Target:  5'- -cAGCGcGCGU-GCCGCCcgGCGGGGcUGCg -3'
miRNA:   3'- aaUCGU-CGCAgCGGCGG--UGUUUC-AUG- -5'
23794 5' -53.8 NC_005261.1 + 101639 0.73 0.555475
Target:  5'- -cGGCcGCGUCG-CGCCGCAccGUGCu -3'
miRNA:   3'- aaUCGuCGCAGCgGCGGUGUuuCAUG- -5'
23794 5' -53.8 NC_005261.1 + 101406 0.66 0.927173
Target:  5'- -cAGCAGCGcCGCUugcgucacgacgucgGCCGCcGAGgcgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGG---------------CGGUGuUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 101155 0.85 0.132414
Target:  5'- -cGGCGGCG-CGCCGCCGCGAAGaGCu -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 100702 0.68 0.871621
Target:  5'- --cGCGGCGcgCGCCGCC-CGAGccGCg -3'
miRNA:   3'- aauCGUCGCa-GCGGCGGuGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 100662 0.66 0.935702
Target:  5'- -cGGCGcGCGUCGCgggguuCGCgCGC-GAGUGCa -3'
miRNA:   3'- aaUCGU-CGCAGCG------GCG-GUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100594 0.68 0.830587
Target:  5'- -cAGgAGCGcCGCCacgcgGCCGCGcAGGUGCa -3'
miRNA:   3'- aaUCgUCGCaGCGG-----CGGUGU-UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 100057 0.68 0.855861
Target:  5'- -gAGC-GCGcCGCCGCCGCccGGggGCg -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGuuUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 99856 0.67 0.900295
Target:  5'- -cGGCAccggccgccgcGCGcCGCCGCCGCucGGcGCg -3'
miRNA:   3'- aaUCGU-----------CGCaGCGGCGGUGuuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 99729 0.67 0.879154
Target:  5'- gUGGCcGCGUCaggcgcguGCCGCCACAcGGccaGCa -3'
miRNA:   3'- aAUCGuCGCAG--------CGGCGGUGUuUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 99353 0.69 0.794183
Target:  5'- -cAGCAGCG-CGCaCGUgACGAGGUccaGCg -3'
miRNA:   3'- aaUCGUCGCaGCG-GCGgUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 98849 0.69 0.793238
Target:  5'- -cAGCGG-GUCGCCGCUugcggcgGCGAAGUcCg -3'
miRNA:   3'- aaUCGUCgCAGCGGCGG-------UGUUUCAuG- -5'
23794 5' -53.8 NC_005261.1 + 98309 0.66 0.924937
Target:  5'- -cGGgGGCGggCGCCGCCGCcagcgGCg -3'
miRNA:   3'- aaUCgUCGCa-GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 98205 0.8 0.254351
Target:  5'- -gGGCAGCGggCGCCGCCACGGcAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.