miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 98018 0.67 0.900295
Target:  5'- cUGGCGGCGagGCuggagaCGCCGC--GGUACu -3'
miRNA:   3'- aAUCGUCGCagCG------GCGGUGuuUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 97845 0.78 0.332303
Target:  5'- -gGGCGGCGggCGCCGCCGCGGcAGcGCg -3'
miRNA:   3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5'
23794 5' -53.8 NC_005261.1 + 95741 0.75 0.474141
Target:  5'- -cAGCGGCGcCGCCGCCGCcgccGGGgGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGCGGUGu---UUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 95036 0.72 0.661707
Target:  5'- -cGGCGGCGcUCGgCGCCGCAGAccGCc -3'
miRNA:   3'- aaUCGUCGC-AGCgGCGGUGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 94191 0.73 0.597709
Target:  5'- --cGCGGUG-CGCgGCCAgGAAGUGCc -3'
miRNA:   3'- aauCGUCGCaGCGgCGGUgUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 94059 0.67 0.890706
Target:  5'- -cAGCGGCGccgggagcagaacCGCCGCCGCcGGGaACg -3'
miRNA:   3'- aaUCGUCGCa------------GCGGCGGUGuUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 93841 0.73 0.58709
Target:  5'- -gGGCGGCGcCGCCGagcaguCCACGAGGcGCg -3'
miRNA:   3'- aaUCGUCGCaGCGGC------GGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 93480 0.74 0.524376
Target:  5'- -gGGCGcGCGUCGcCCGCgGCGAAGcGCg -3'
miRNA:   3'- aaUCGU-CGCAGC-GGCGgUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 93109 0.69 0.78466
Target:  5'- --cGCGcGCGUCGUCGCCGgAAAaUGCg -3'
miRNA:   3'- aauCGU-CGCAGCGGCGGUgUUUcAUG- -5'
23794 5' -53.8 NC_005261.1 + 91424 0.67 0.893496
Target:  5'- -gAGC-GCGaCGCCGCCGCGGuGaACg -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUUuCaUG- -5'
23794 5' -53.8 NC_005261.1 + 90582 0.67 0.879154
Target:  5'- -aAGCAGCag-GCCGCCAuCAAGGUc- -3'
miRNA:   3'- aaUCGUCGcagCGGCGGU-GUUUCAug -5'
23794 5' -53.8 NC_005261.1 + 88340 0.75 0.464381
Target:  5'- cUGGCGGCGcccCGCCGCCGCGgcGUucACa -3'
miRNA:   3'- aAUCGUCGCa--GCGGCGGUGUuuCA--UG- -5'
23794 5' -53.8 NC_005261.1 + 87944 0.68 0.871621
Target:  5'- -gAGCcGCG-CGCCGCCACGGc---- -3'
miRNA:   3'- aaUCGuCGCaGCGGCGGUGUUucaug -5'
23794 5' -53.8 NC_005261.1 + 87681 0.71 0.723718
Target:  5'- -cAGCGGUgaGUCGCagcuccgCGCCGCAAgcAGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCG-------GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 87114 0.67 0.879154
Target:  5'- --cGCGGCGUUGUagaaggGCCGC-GGGUACg -3'
miRNA:   3'- aauCGUCGCAGCGg-----CGGUGuUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 85547 0.66 0.913132
Target:  5'- -gGGCGGCuccgucugCGgCGCCGCGAGGUucgGCg -3'
miRNA:   3'- aaUCGUCGca------GCgGCGGUGUUUCA---UG- -5'
23794 5' -53.8 NC_005261.1 + 83685 0.68 0.855861
Target:  5'- --cGCAGCG-CGCCGCCG--AGGcgGCg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGUguUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 83597 0.67 0.879154
Target:  5'- -cAGCAgcGCGUCGCucucCGCCGCGgcGUGg -3'
miRNA:   3'- aaUCGU--CGCAGCG----GCGGUGUuuCAUg -5'
23794 5' -53.8 NC_005261.1 + 81506 0.67 0.900295
Target:  5'- --cGCGGCGcgcgCGCCGCCGCcg---GCg -3'
miRNA:   3'- aauCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 81428 0.7 0.774988
Target:  5'- -aGGCGGCGUCGUCGgCCGCcccgcgGCg -3'
miRNA:   3'- aaUCGUCGCAGCGGC-GGUGuuuca-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.