Results 101 - 120 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 80669 | 0.69 | 0.812742 |
Target: 5'- --cGCGGUGcgCGCCGUCGCGGAGc-- -3' miRNA: 3'- aauCGUCGCa-GCGGCGGUGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 80129 | 0.71 | 0.714398 |
Target: 5'- -cGGCAGCGgcggCGCCGCUACcaccgGCg -3' miRNA: 3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 79845 | 0.68 | 0.830587 |
Target: 5'- --cGCAGCGcuaGCCGCCGCGcugGGGUugaGCu -3' miRNA: 3'- aauCGUCGCag-CGGCGGUGU---UUCA---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 78850 | 0.69 | 0.803548 |
Target: 5'- -cGGCGGCGccCGCCGCCG--GAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUguUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 78010 | 0.78 | 0.324541 |
Target: 5'- -cAGCAGCa--GCCGCCGCAGcAGUACg -3' miRNA: 3'- aaUCGUCGcagCGGCGGUGUU-UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 77563 | 0.69 | 0.821759 |
Target: 5'- --cGcCAGUGgCGCCGCCGCGcccuggcaccccGGGUACg -3' miRNA: 3'- aauC-GUCGCaGCGGCGGUGU------------UUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 77157 | 0.69 | 0.794183 |
Target: 5'- -----cGCGcCGCCGCCGCGAGGcggGCa -3' miRNA: 3'- aaucguCGCaGCGGCGGUGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 76153 | 0.69 | 0.812742 |
Target: 5'- gUGGCGGCGcacgaCGCCGUgGCGcugcAGUACg -3' miRNA: 3'- aAUCGUCGCa----GCGGCGgUGUu---UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 75589 | 0.67 | 0.902944 |
Target: 5'- --cGCGGCGcucgCGCgCGCCGCGGAcgcggacggcgucgcGUACg -3' miRNA: 3'- aauCGUCGCa---GCG-GCGGUGUUU---------------CAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 75481 | 0.66 | 0.924937 |
Target: 5'- -cGGCGGCGcggGCCGCUACGAgcgcGGgGCg -3' miRNA: 3'- aaUCGUCGCag-CGGCGGUGUU----UCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 74760 | 0.66 | 0.935702 |
Target: 5'- -cGGCAGCG-CGCCacaGgCGCGGAGgucgACg -3' miRNA: 3'- aaUCGUCGCaGCGG---CgGUGUUUCa---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 73369 | 0.69 | 0.797949 |
Target: 5'- -aGGCGGCGccagcagCGCgGCCACGcgcgcgugcagcaccAGGUACg -3' miRNA: 3'- aaUCGUCGCa------GCGgCGGUGU---------------UUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 73160 | 0.68 | 0.847647 |
Target: 5'- -aGGCGGCGUUGuuGCUcggccggggGgAGGGUGCa -3' miRNA: 3'- aaUCGUCGCAGCggCGG---------UgUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 72961 | 0.69 | 0.78466 |
Target: 5'- -cGGCucGCGccCGCCGCCGCGGGGguccGCg -3' miRNA: 3'- aaUCGu-CGCa-GCGGCGGUGUUUCa---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 71994 | 0.66 | 0.919164 |
Target: 5'- --cGCAGCGUCGCCccugGCCuuaacgcCGGGGgcgACg -3' miRNA: 3'- aauCGUCGCAGCGG----CGGu------GUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 70594 | 0.7 | 0.765177 |
Target: 5'- -cAGCGGCGUgCGcCCGCC-CGAAGa-- -3' miRNA: 3'- aaUCGUCGCA-GC-GGCGGuGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 70537 | 0.68 | 0.839219 |
Target: 5'- -cGGCGGCGcccgCGCCccacccGCCGCAGGGcGCc -3' miRNA: 3'- aaUCGUCGCa---GCGG------CGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 70502 | 0.71 | 0.682931 |
Target: 5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3' miRNA: 3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 68574 | 0.69 | 0.794183 |
Target: 5'- -gAGC-GCGUCGCCGCCgagGCGGGccGCg -3' miRNA: 3'- aaUCGuCGCAGCGGCGG---UGUUUcaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 67992 | 0.74 | 0.545042 |
Target: 5'- --cGCAGCGUCGUCGCgCACAAcggGGUc- -3' miRNA: 3'- aauCGUCGCAGCGGCG-GUGUU---UCAug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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