Results 41 - 60 of 222 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 97845 | 0.78 | 0.332303 |
Target: 5'- -gGGCGGCGggCGCCGCCGCGGcAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 78010 | 0.78 | 0.324541 |
Target: 5'- -cAGCAGCa--GCCGCCGCAGcAGUACg -3' miRNA: 3'- aaUCGUCGcagCGGCGGUGUU-UCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 137886 | 0.79 | 0.287767 |
Target: 5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 203 | 0.79 | 0.287767 |
Target: 5'- -cAGCGGUGcCGCCGCCGCcccuGGUGCu -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGuu--UCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 98205 | 0.8 | 0.254351 |
Target: 5'- -gGGCAGCGggCGCCGCCACGGcAGcGCg -3' miRNA: 3'- aaUCGUCGCa-GCGGCGGUGUU-UCaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 67372 | 0.74 | 0.524376 |
Target: 5'- -cGGCAGCGcCaCCGCCGCGAAG-ACc -3' miRNA: 3'- aaUCGUCGCaGcGGCGGUGUUUCaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 67992 | 0.74 | 0.545042 |
Target: 5'- --cGCAGCGUCGUCGCgCACAAcggGGUc- -3' miRNA: 3'- aauCGUCGCAGCGGCG-GUGUU---UCAug -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 2196 | 0.72 | 0.651051 |
Target: 5'- -cAGCAGCcgGUUGCCcagcGCCGCGAgcaGGUGCg -3' miRNA: 3'- aaUCGUCG--CAGCGG----CGGUGUU---UCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 107678 | 0.72 | 0.651051 |
Target: 5'- --cGCcgGGCGUUGCCGCCGCGgcGgggGCg -3' miRNA: 3'- aauCG--UCGCAGCGGCGGUGUuuCa--UG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 53113 | 0.72 | 0.651051 |
Target: 5'- --cGCGGCGcugcgCGCCGCCaACAGGGcgGCg -3' miRNA: 3'- aauCGUCGCa----GCGGCGG-UGUUUCa-UG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 104443 | 0.72 | 0.640379 |
Target: 5'- -gGGCccGCGUCGCCGCCGCcggcgGCg -3' miRNA: 3'- aaUCGu-CGCAGCGGCGGUGuuucaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 4087 | 0.72 | 0.640379 |
Target: 5'- -cGGCAGCGgCGCCGUCACGcucccGGUGa -3' miRNA: 3'- aaUCGUCGCaGCGGCGGUGUu----UCAUg -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 31995 | 0.72 | 0.6297 |
Target: 5'- --cGCGGUGcccgUGCCGCCGCGcGAGUACc -3' miRNA: 3'- aauCGUCGCa---GCGGCGGUGU-UUCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 129533 | 0.72 | 0.619022 |
Target: 5'- -aGGCGcGCGggCuaCGCCGCAAGGUGCa -3' miRNA: 3'- aaUCGU-CGCa-GcgGCGGUGUUUCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 27578 | 0.73 | 0.608356 |
Target: 5'- -gAGCAcCGUCGCCGCCGacu-GUACc -3' miRNA: 3'- aaUCGUcGCAGCGGCGGUguuuCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 94191 | 0.73 | 0.597709 |
Target: 5'- --cGCGGUG-CGCgGCCAgGAAGUGCc -3' miRNA: 3'- aauCGUCGCaGCGgCGGUgUUUCAUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 105979 | 0.73 | 0.58709 |
Target: 5'- --cGCGGCGUcgaCGCCGCCcGCGAAGgcCa -3' miRNA: 3'- aauCGUCGCA---GCGGCGG-UGUUUCauG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 93841 | 0.73 | 0.58709 |
Target: 5'- -gGGCGGCGcCGCCGagcaguCCACGAGGcGCg -3' miRNA: 3'- aaUCGUCGCaGCGGC------GGUGUUUCaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 23603 | 0.73 | 0.565966 |
Target: 5'- gUGGUGGCuGUCGCCGCCGCugccGGGGcGCg -3' miRNA: 3'- aAUCGUCG-CAGCGGCGGUG----UUUCaUG- -5' |
|||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 101639 | 0.73 | 0.555475 |
Target: 5'- -cGGCcGCGUCG-CGCCGCAccGUGCu -3' miRNA: 3'- aaUCGuCGCAGCgGCGGUGUuuCAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home