miRNA display CGI


Results 81 - 100 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 552 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 59566 0.71 0.703972
Target:  5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3'
miRNA:   3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 138223 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 105167 0.71 0.713359
Target:  5'- -gGGCGGCGUccacggggcccgcCGCCGCCGCGGcagGCu -3'
miRNA:   3'- aaUCGUCGCA-------------GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 64606 0.71 0.714398
Target:  5'- -cAGCAGC--CGCCGCgCGCGAAGgccgGCa -3'
miRNA:   3'- aaUCGUCGcaGCGGCG-GUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 80129 0.71 0.714398
Target:  5'- -cGGCAGCGgcggCGCCGCUACcaccgGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 23212 0.71 0.714398
Target:  5'- --cGCAGCGgcgGCCGCgCGCAAaagccGGUGCa -3'
miRNA:   3'- aauCGUCGCag-CGGCG-GUGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 51986 0.71 0.693479
Target:  5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 13113 0.71 0.693479
Target:  5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3'
miRNA:   3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 58163 0.71 0.693479
Target:  5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3'
miRNA:   3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 53113 0.72 0.651051
Target:  5'- --cGCGGCGcugcgCGCCGCCaACAGGGcgGCg -3'
miRNA:   3'- aauCGUCGCa----GCGGCGG-UGUUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 107678 0.72 0.651051
Target:  5'- --cGCcgGGCGUUGCCGCCGCGgcGgggGCg -3'
miRNA:   3'- aauCG--UCGCAGCGGCGGUGUuuCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 2196 0.72 0.651051
Target:  5'- -cAGCAGCcgGUUGCCcagcGCCGCGAgcaGGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCGG----CGGUGUU---UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 10905 0.72 0.661707
Target:  5'- -cGGCGGCGgcagCGCCGCCGCcGGccGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 95036 0.72 0.661707
Target:  5'- -cGGCGGCGcUCGgCGCCGCAGAccGCc -3'
miRNA:   3'- aaUCGUCGC-AGCgGCGGUGUUUcaUG- -5'
23794 5' -53.8 NC_005261.1 + 59278 0.72 0.661707
Target:  5'- -cGGC-GUGUCGCCGCCcaGCAGcgcgcAGUGCc -3'
miRNA:   3'- aaUCGuCGCAGCGGCGG--UGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 13656 0.71 0.672336
Target:  5'- --cGCcGUGcCGCCGCCGCGGGGgggGCg -3'
miRNA:   3'- aauCGuCGCaGCGGCGGUGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 55240 0.71 0.682931
Target:  5'- -cGGCAGCaccgcaGCCGCCGCGAGGa-- -3'
miRNA:   3'- aaUCGUCGcag---CGGCGGUGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 70502 0.71 0.682931
Target:  5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3'
miRNA:   3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 44981 0.71 0.693479
Target:  5'- -gGGCccgGGCGg-GCCGCCACA-GGUGCu -3'
miRNA:   3'- aaUCG---UCGCagCGGCGGUGUuUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.