miRNA display CGI


Results 121 - 140 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23794 5' -53.8 NC_005261.1 + 70594 0.7 0.765177
Target:  5'- -cAGCGGCGUgCGcCCGCC-CGAAGa-- -3'
miRNA:   3'- aaUCGUCGCA-GC-GGCGGuGUUUCaug -5'
23794 5' -53.8 NC_005261.1 + 103869 0.7 0.765177
Target:  5'- -cGGCGGCGgggcggCGCCGCCGgGcGGcGCg -3'
miRNA:   3'- aaUCGUCGCa-----GCGGCGGUgUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 87681 0.71 0.723718
Target:  5'- -cAGCGGUgaGUCGCagcuccgCGCCGCAAgcAGUGCg -3'
miRNA:   3'- aaUCGUCG--CAGCG-------GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 3433 0.71 0.718548
Target:  5'- -gGGcCAGCGUCcaggcgggcgcgcggGCCGCCGCGccgcgcgucGAGUACc -3'
miRNA:   3'- aaUC-GUCGCAG---------------CGGCGGUGU---------UUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 102005 0.71 0.714398
Target:  5'- gUAGUGGCGcagcUCGCCGCCGCccGAGGccGCg -3'
miRNA:   3'- aAUCGUCGC----AGCGGCGGUG--UUUCa-UG- -5'
23794 5' -53.8 NC_005261.1 + 58163 0.71 0.693479
Target:  5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3'
miRNA:   3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 13113 0.71 0.693479
Target:  5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3'
miRNA:   3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 51986 0.71 0.693479
Target:  5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3'
miRNA:   3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 104824 0.71 0.702925
Target:  5'- -cAGCGGCGUCGCggggccgCGCCACGcGG-ACc -3'
miRNA:   3'- aaUCGUCGCAGCG-------GCGGUGUuUCaUG- -5'
23794 5' -53.8 NC_005261.1 + 16053 0.71 0.703972
Target:  5'- -gGGCAGCGggcccgCGCCgaGCCggcgcguguagACGAAGUACg -3'
miRNA:   3'- aaUCGUCGCa-----GCGG--CGG-----------UGUUUCAUG- -5'
23794 5' -53.8 NC_005261.1 + 27451 0.71 0.703972
Target:  5'- uUUGGCGGCGg-GCCGCCccGCGGGGcggGCa -3'
miRNA:   3'- -AAUCGUCGCagCGGCGG--UGUUUCa--UG- -5'
23794 5' -53.8 NC_005261.1 + 552 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 59566 0.71 0.703972
Target:  5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3'
miRNA:   3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 138223 0.71 0.703972
Target:  5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3'
miRNA:   3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5'
23794 5' -53.8 NC_005261.1 + 105167 0.71 0.713359
Target:  5'- -gGGCGGCGUccacggggcccgcCGCCGCCGCGGcagGCu -3'
miRNA:   3'- aaUCGUCGCA-------------GCGGCGGUGUUucaUG- -5'
23794 5' -53.8 NC_005261.1 + 64606 0.71 0.714398
Target:  5'- -cAGCAGC--CGCCGCgCGCGAAGgccgGCa -3'
miRNA:   3'- aaUCGUCGcaGCGGCG-GUGUUUCa---UG- -5'
23794 5' -53.8 NC_005261.1 + 80129 0.71 0.714398
Target:  5'- -cGGCAGCGgcggCGCCGCUACcaccgGCg -3'
miRNA:   3'- aaUCGUCGCa---GCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 23212 0.71 0.714398
Target:  5'- --cGCAGCGgcgGCCGCgCGCAAaagccGGUGCa -3'
miRNA:   3'- aauCGUCGCag-CGGCG-GUGUU-----UCAUG- -5'
23794 5' -53.8 NC_005261.1 + 28200 0.71 0.714398
Target:  5'- -cGGCGGCcUCGCCGCCGCugcc-GCg -3'
miRNA:   3'- aaUCGUCGcAGCGGCGGUGuuucaUG- -5'
23794 5' -53.8 NC_005261.1 + 49593 0.71 0.714398
Target:  5'- -gGGCGcGCGgCGCUGCUGuCAAAGUACa -3'
miRNA:   3'- aaUCGU-CGCaGCGGCGGU-GUUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.