Results 101 - 120 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 12198 | 0.71 | 0.724749 |
Target: 5'- --uGCAGCGcCGCCGCC----GGUGCc -3' miRNA: 3'- aauCGUCGCaGCGGCGGuguuUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 108799 | 0.71 | 0.728865 |
Target: 5'- gUUGGCAGCGUgCGCCagggcgcugagccccGCCugGAAGaaggGCa -3' miRNA: 3'- -AAUCGUCGCA-GCGG---------------CGGugUUUCa---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 56115 | 0.7 | 0.735012 |
Target: 5'- -gAGCGGCGggaGCgCGCCGCAGGGcgggggGCg -3' miRNA: 3'- aaUCGUCGCag-CG-GCGGUGUUUCa-----UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 118415 | 0.7 | 0.735012 |
Target: 5'- --cGCAGCcgcgcuggcuGUCGCCGCCGCGGAc--- -3' miRNA: 3'- aauCGUCG----------CAGCGGCGGUGUUUcaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 973 | 0.7 | 0.745179 |
Target: 5'- -gAGCGGCGg-GCCGCgCGCAGAGc-- -3' miRNA: 3'- aaUCGUCGCagCGGCG-GUGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 105167 | 0.71 | 0.713359 |
Target: 5'- -gGGCGGCGUccacggggcccgcCGCCGCCGCGGcagGCu -3' miRNA: 3'- aaUCGUCGCA-------------GCGGCGGUGUUucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 138223 | 0.71 | 0.703972 |
Target: 5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3' miRNA: 3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 59278 | 0.72 | 0.661707 |
Target: 5'- -cGGC-GUGUCGCCGCCcaGCAGcgcgcAGUGCc -3' miRNA: 3'- aaUCGuCGCAGCGGCGG--UGUU-----UCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 13656 | 0.71 | 0.672336 |
Target: 5'- --cGCcGUGcCGCCGCCGCGGGGgggGCg -3' miRNA: 3'- aauCGuCGCaGCGGCGGUGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 55240 | 0.71 | 0.682931 |
Target: 5'- -cGGCAGCaccgcaGCCGCCGCGAGGa-- -3' miRNA: 3'- aaUCGUCGcag---CGGCGGUGUUUCaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 70502 | 0.71 | 0.682931 |
Target: 5'- gUAGCuGGCGuUCGgCGCCACGGGG-ACg -3' miRNA: 3'- aAUCG-UCGC-AGCgGCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 44981 | 0.71 | 0.693479 |
Target: 5'- -gGGCccgGGCGg-GCCGCCACA-GGUGCu -3' miRNA: 3'- aaUCG---UCGCagCGGCGGUGUuUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 58163 | 0.71 | 0.693479 |
Target: 5'- --cGCGcgaGUCGCUGCgCACGAGGUGCa -3' miRNA: 3'- aauCGUcg-CAGCGGCG-GUGUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 13113 | 0.71 | 0.693479 |
Target: 5'- -cGGgGGCGUCgGCgGCCGCGGGGcGCg -3' miRNA: 3'- aaUCgUCGCAG-CGgCGGUGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 51986 | 0.71 | 0.693479 |
Target: 5'- --cGCGGCGcCGCCGCCGacuuCGAGG-ACg -3' miRNA: 3'- aauCGUCGCaGCGGCGGU----GUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 104824 | 0.71 | 0.702925 |
Target: 5'- -cAGCGGCGUCGCggggccgCGCCACGcGG-ACc -3' miRNA: 3'- aaUCGUCGCAGCG-------GCGGUGUuUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 16053 | 0.71 | 0.703972 |
Target: 5'- -gGGCAGCGggcccgCGCCgaGCCggcgcguguagACGAAGUACg -3' miRNA: 3'- aaUCGUCGCa-----GCGG--CGG-----------UGUUUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 27451 | 0.71 | 0.703972 |
Target: 5'- uUUGGCGGCGg-GCCGCCccGCGGGGcggGCa -3' miRNA: 3'- -AAUCGUCGCagCGGCGG--UGUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 552 | 0.71 | 0.703972 |
Target: 5'- -cGGCGGC-UCgGCCGCCGCGcGGUGa -3' miRNA: 3'- aaUCGUCGcAG-CGGCGGUGUuUCAUg -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 59566 | 0.71 | 0.703972 |
Target: 5'- -cGGCGcGCG-CGCgCGCCGCAGcgGGUGCc -3' miRNA: 3'- aaUCGU-CGCaGCG-GCGGUGUU--UCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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