Results 21 - 40 of 222 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23794 | 5' | -53.8 | NC_005261.1 | + | 98309 | 0.66 | 0.924937 |
Target: 5'- -cGGgGGCGggCGCCGCCGCcagcgGCg -3' miRNA: 3'- aaUCgUCGCa-GCGGCGGUGuuucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 75481 | 0.66 | 0.924937 |
Target: 5'- -cGGCGGCGcggGCCGCUACGAgcgcGGgGCg -3' miRNA: 3'- aaUCGUCGCag-CGGCGGUGUU----UCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 4468 | 0.66 | 0.924937 |
Target: 5'- -cGGCGGCccGUCGCgcggCGCCGCGgcGUAg -3' miRNA: 3'- aaUCGUCG--CAGCG----GCGGUGUuuCAUg -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 4003 | 0.66 | 0.919164 |
Target: 5'- gUAGCGGCGgcUCauggccacgcagGCCGCCAC---GUGCg -3' miRNA: 3'- aAUCGUCGC--AG------------CGGCGGUGuuuCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 135428 | 0.66 | 0.919164 |
Target: 5'- -gAGguGCGcUCGCaCGCCGCccAGgcgGCg -3' miRNA: 3'- aaUCguCGC-AGCG-GCGGUGuuUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 71994 | 0.66 | 0.919164 |
Target: 5'- --cGCAGCGUCGCCccugGCCuuaacgcCGGGGgcgACg -3' miRNA: 3'- aauCGUCGCAGCGG----CGGu------GUUUCa--UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 28804 | 0.66 | 0.919164 |
Target: 5'- --cGCGGCGgaggcaGCCGCCGcCGAAGccgagGCg -3' miRNA: 3'- aauCGUCGCag----CGGCGGU-GUUUCa----UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 113569 | 0.66 | 0.919164 |
Target: 5'- -gAGCAGUggucgGUgGCCGCCGCGcuGgGCg -3' miRNA: 3'- aaUCGUCG-----CAgCGGCGGUGUuuCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 131196 | 0.66 | 0.919164 |
Target: 5'- --cGCGGCGcggUCGCCGCCgGCGcgcccgcGUACg -3' miRNA: 3'- aauCGUCGC---AGCGGCGG-UGUuu-----CAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 1312 | 0.66 | 0.913747 |
Target: 5'- -cGGCGGCGgcacgcgcuccgggaCGCCGCCGCGccGcGCc -3' miRNA: 3'- aaUCGUCGCa--------------GCGGCGGUGUuuCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 103965 | 0.66 | 0.913132 |
Target: 5'- --cGCGGCG--GCCGCCACAcggAAGcGCu -3' miRNA: 3'- aauCGUCGCagCGGCGGUGU---UUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 112078 | 0.66 | 0.913132 |
Target: 5'- --cGuCGGCGagGgCGCCACGuGGUGCg -3' miRNA: 3'- aauC-GUCGCagCgGCGGUGUuUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 85547 | 0.66 | 0.913132 |
Target: 5'- -gGGCGGCuccgucugCGgCGCCGCGAGGUucgGCg -3' miRNA: 3'- aaUCGUCGca------GCgGCGGUGUUUCA---UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 132478 | 0.66 | 0.913132 |
Target: 5'- -cGGCAGCGccUCGCCGuCCugGGAc--- -3' miRNA: 3'- aaUCGUCGC--AGCGGC-GGugUUUcaug -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 44024 | 0.67 | 0.906841 |
Target: 5'- --cGCGGCGggcgGCCGCCGCGcGGcgGCc -3' miRNA: 3'- aauCGUCGCag--CGGCGGUGUuUCa-UG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 16394 | 0.67 | 0.906841 |
Target: 5'- --cGCcGuCGUCGUCGCCGgGcGGUGCg -3' miRNA: 3'- aauCGuC-GCAGCGGCGGUgUuUCAUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 101781 | 0.67 | 0.906841 |
Target: 5'- -cAGCGcGCGU-GCCGCCcgGCGGGGcUGCg -3' miRNA: 3'- aaUCGU-CGCAgCGGCGG--UGUUUC-AUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 135080 | 0.67 | 0.906841 |
Target: 5'- -cGGCGGCGggcUCGCgGCCcggcgGCGGAGcGCg -3' miRNA: 3'- aaUCGUCGC---AGCGgCGG-----UGUUUCaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 12337 | 0.67 | 0.906841 |
Target: 5'- cUUGGcCGGCGcggcCGCCGCCGCGGcg-GCa -3' miRNA: 3'- -AAUC-GUCGCa---GCGGCGGUGUUucaUG- -5' |
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23794 | 5' | -53.8 | NC_005261.1 | + | 108452 | 0.67 | 0.906841 |
Target: 5'- -gAGCAGCG-CGUCGUCgGCGAGGa-- -3' miRNA: 3'- aaUCGUCGCaGCGGCGG-UGUUUCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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