miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23795 3' -53.9 NC_005261.1 + 76054 0.66 0.957069
Target:  5'- aGCGUGGcCggCgGGCGCCaCCAgGGCGg -3'
miRNA:   3'- -CGUAUCuGa-GgUCGCGGaGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 126264 0.66 0.956684
Target:  5'- cGCGUccaAGAagccgucCUCCAGCGCCacgacgCCGUGGu- -3'
miRNA:   3'- -CGUA---UCU-------GAGGUCGCGGa-----GGUACUgc -5'
23795 3' -53.9 NC_005261.1 + 53276 0.66 0.953113
Target:  5'- aGCAUgucgauggAGGCgCCaAGCGCCcCCGUGcGCGg -3'
miRNA:   3'- -CGUA--------UCUGaGG-UCGCGGaGGUAC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 123344 0.66 0.948485
Target:  5'- aGCGgcucgcGGCcgaCCAGCGCCUCUAUGcuguccaGCGa -3'
miRNA:   3'- -CGUau----CUGa--GGUCGCGGAGGUAC-------UGC- -5'
23795 3' -53.9 NC_005261.1 + 62314 0.66 0.94448
Target:  5'- cGCGgcGGCcccgcggucccCCAGCGCCUCCAccGCGc -3'
miRNA:   3'- -CGUauCUGa----------GGUCGCGGAGGUacUGC- -5'
23795 3' -53.9 NC_005261.1 + 34933 0.66 0.94448
Target:  5'- cGCGggGGGCggCCGGCGCgaCCcgGGCc -3'
miRNA:   3'- -CGUa-UCUGa-GGUCGCGgaGGuaCUGc -5'
23795 3' -53.9 NC_005261.1 + 84962 0.66 0.94448
Target:  5'- cGCcgAGGCgUCgGGCGCgUCCGcGAUGc -3'
miRNA:   3'- -CGuaUCUG-AGgUCGCGgAGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 48901 0.66 0.939798
Target:  5'- cGCAguUGGcCUCUAGCGCgagCCcgGGCGc -3'
miRNA:   3'- -CGU--AUCuGAGGUCGCGga-GGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 41114 0.66 0.939798
Target:  5'- cGCGgcGGGC-CCgAGCGCUUCCugcGUGGCGc -3'
miRNA:   3'- -CGUa-UCUGaGG-UCGCGGAGG---UACUGC- -5'
23795 3' -53.9 NC_005261.1 + 31862 0.66 0.939798
Target:  5'- cGCGUcuucGGGC-CCGGCGCCUUCGcGcGCGc -3'
miRNA:   3'- -CGUA----UCUGaGGUCGCGGAGGUaC-UGC- -5'
23795 3' -53.9 NC_005261.1 + 57565 0.66 0.93487
Target:  5'- cGCGcccGGCUCCGGCGCCgCguUGAgCGc -3'
miRNA:   3'- -CGUau-CUGAGGUCGCGGaGguACU-GC- -5'
23795 3' -53.9 NC_005261.1 + 13435 0.66 0.93487
Target:  5'- cGCGUcgaccgggugcAGGCaggCCGGCGCCUCgGgGugGa -3'
miRNA:   3'- -CGUA-----------UCUGa--GGUCGCGGAGgUaCugC- -5'
23795 3' -53.9 NC_005261.1 + 101455 0.67 0.929692
Target:  5'- aGCGcuGGCcCCAGCGCCgCCGgcGGCGg -3'
miRNA:   3'- -CGUauCUGaGGUCGCGGaGGUa-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 84555 0.67 0.91859
Target:  5'- ---cGGGC-CCAGCGCCUggagcacggccCCGUaGACGg -3'
miRNA:   3'- cguaUCUGaGGUCGCGGA-----------GGUA-CUGC- -5'
23795 3' -53.9 NC_005261.1 + 110002 0.67 0.912666
Target:  5'- uCGUGGACacgcccgCCGGCGCCgCCGuccuuucgccUGGCGg -3'
miRNA:   3'- cGUAUCUGa------GGUCGCGGaGGU----------ACUGC- -5'
23795 3' -53.9 NC_005261.1 + 67507 0.67 0.912666
Target:  5'- cGCGUAGuaggCCAGCGUCgCCGcGGCGc -3'
miRNA:   3'- -CGUAUCuga-GGUCGCGGaGGUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 66674 0.67 0.912666
Target:  5'- aGCA---GCcCCAGCGCCUCgGcGGCGa -3'
miRNA:   3'- -CGUaucUGaGGUCGCGGAGgUaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 110157 0.68 0.893421
Target:  5'- gGCAUGGcCgccgCCAccGCGCCcCCcgGGCGg -3'
miRNA:   3'- -CGUAUCuGa---GGU--CGCGGaGGuaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 108604 0.68 0.872034
Target:  5'- cCAcGGGCaCCAGCGCCUCg--GGCGg -3'
miRNA:   3'- cGUaUCUGaGGUCGCGGAGguaCUGC- -5'
23795 3' -53.9 NC_005261.1 + 639 0.68 0.872034
Target:  5'- gGCGgcGGCcgCCAGCGCCgcgUCCccGGCGc -3'
miRNA:   3'- -CGUauCUGa-GGUCGCGG---AGGuaCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.