Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23795 | 3' | -53.9 | NC_005261.1 | + | 123344 | 0.66 | 0.948485 |
Target: 5'- aGCGgcucgcGGCcgaCCAGCGCCUCUAUGcuguccaGCGa -3' miRNA: 3'- -CGUau----CUGa--GGUCGCGGAGGUAC-------UGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 48901 | 0.66 | 0.939798 |
Target: 5'- cGCAguUGGcCUCUAGCGCgagCCcgGGCGc -3' miRNA: 3'- -CGU--AUCuGAGGUCGCGga-GGuaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 41114 | 0.66 | 0.939798 |
Target: 5'- cGCGgcGGGC-CCgAGCGCUUCCugcGUGGCGc -3' miRNA: 3'- -CGUa-UCUGaGG-UCGCGGAGG---UACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 31862 | 0.66 | 0.939798 |
Target: 5'- cGCGUcuucGGGC-CCGGCGCCUUCGcGcGCGc -3' miRNA: 3'- -CGUA----UCUGaGGUCGCGGAGGUaC-UGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 57565 | 0.66 | 0.93487 |
Target: 5'- cGCGcccGGCUCCGGCGCCgCguUGAgCGc -3' miRNA: 3'- -CGUau-CUGAGGUCGCGGaGguACU-GC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 13435 | 0.66 | 0.93487 |
Target: 5'- cGCGUcgaccgggugcAGGCaggCCGGCGCCUCgGgGugGa -3' miRNA: 3'- -CGUA-----------UCUGa--GGUCGCGGAGgUaCugC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 84962 | 0.66 | 0.94448 |
Target: 5'- cGCcgAGGCgUCgGGCGCgUCCGcGAUGc -3' miRNA: 3'- -CGuaUCUG-AGgUCGCGgAGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 62314 | 0.66 | 0.94448 |
Target: 5'- cGCGgcGGCcccgcggucccCCAGCGCCUCCAccGCGc -3' miRNA: 3'- -CGUauCUGa----------GGUCGCGGAGGUacUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 34933 | 0.66 | 0.94448 |
Target: 5'- cGCGggGGGCggCCGGCGCgaCCcgGGCc -3' miRNA: 3'- -CGUa-UCUGa-GGUCGCGgaGGuaCUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 76054 | 0.66 | 0.957069 |
Target: 5'- aGCGUGGcCggCgGGCGCCaCCAgGGCGg -3' miRNA: 3'- -CGUAUCuGa-GgUCGCGGaGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 126264 | 0.66 | 0.956684 |
Target: 5'- cGCGUccaAGAagccgucCUCCAGCGCCacgacgCCGUGGu- -3' miRNA: 3'- -CGUA---UCU-------GAGGUCGCGGa-----GGUACUgc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 53276 | 0.66 | 0.953113 |
Target: 5'- aGCAUgucgauggAGGCgCCaAGCGCCcCCGUGcGCGg -3' miRNA: 3'- -CGUA--------UCUGaGG-UCGCGGaGGUAC-UGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 67507 | 0.67 | 0.912666 |
Target: 5'- cGCGUAGuaggCCAGCGUCgCCGcGGCGc -3' miRNA: 3'- -CGUAUCuga-GGUCGCGGaGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 110002 | 0.67 | 0.912666 |
Target: 5'- uCGUGGACacgcccgCCGGCGCCgCCGuccuuucgccUGGCGg -3' miRNA: 3'- cGUAUCUGa------GGUCGCGGaGGU----------ACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 101455 | 0.67 | 0.929692 |
Target: 5'- aGCGcuGGCcCCAGCGCCgCCGgcGGCGg -3' miRNA: 3'- -CGUauCUGaGGUCGCGGaGGUa-CUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 84555 | 0.67 | 0.91859 |
Target: 5'- ---cGGGC-CCAGCGCCUggagcacggccCCGUaGACGg -3' miRNA: 3'- cguaUCUGaGGUCGCGGA-----------GGUA-CUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 66674 | 0.67 | 0.912666 |
Target: 5'- aGCA---GCcCCAGCGCCUCgGcGGCGa -3' miRNA: 3'- -CGUaucUGaGGUCGCGGAGgUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 108604 | 0.68 | 0.872034 |
Target: 5'- cCAcGGGCaCCAGCGCCUCg--GGCGg -3' miRNA: 3'- cGUaUCUGaGGUCGCGGAGguaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 110157 | 0.68 | 0.893421 |
Target: 5'- gGCAUGGcCgccgCCAccGCGCCcCCcgGGCGg -3' miRNA: 3'- -CGUAUCuGa---GGU--CGCGGaGGuaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 86318 | 0.68 | 0.872034 |
Target: 5'- aGCGUGcuggccacGuACUUCAGCGCgUCCAUGuCGu -3' miRNA: 3'- -CGUAU--------C-UGAGGUCGCGgAGGUACuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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