Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23795 | 3' | -53.9 | NC_005261.1 | + | 48853 | 0.79 | 0.319398 |
Target: 5'- cGCAgcAGGC-CCAGCGCCcgggCCAUGGCGg -3' miRNA: 3'- -CGUa-UCUGaGGUCGCGGa---GGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 107151 | 0.79 | 0.350189 |
Target: 5'- cGCGgccauggAGGCggCCAGCGCCUCCGUcucGGCGg -3' miRNA: 3'- -CGUa------UCUGa-GGUCGCGGAGGUA---CUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 50788 | 0.76 | 0.454555 |
Target: 5'- gGCGgcGGCcgccCCGGCGCCgccgCCAUGACGg -3' miRNA: 3'- -CGUauCUGa---GGUCGCGGa---GGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 122893 | 0.75 | 0.522643 |
Target: 5'- ---cAGAa-CCAGCGCCUCCggGACGg -3' miRNA: 3'- cguaUCUgaGGUCGCGGAGGuaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 121080 | 0.73 | 0.636039 |
Target: 5'- gGCGccGGCggccgCCAGCGCCUCCA-GGCc -3' miRNA: 3'- -CGUauCUGa----GGUCGCGGAGGUaCUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 125043 | 0.73 | 0.646485 |
Target: 5'- gGCGcuGACUCgGGCaggGCCUCUAUGGCGc -3' miRNA: 3'- -CGUauCUGAGgUCG---CGGAGGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 123283 | 0.73 | 0.656919 |
Target: 5'- cGgGUGGuCcgCCAGCGCCUCCGcGAUGu -3' miRNA: 3'- -CgUAUCuGa-GGUCGCGGAGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 58548 | 0.72 | 0.677715 |
Target: 5'- cGCccGGGCUCCuGCGCCgUCGUGGCc -3' miRNA: 3'- -CGuaUCUGAGGuCGCGGaGGUACUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 53008 | 0.72 | 0.698356 |
Target: 5'- gGCGUcGGCgcagcucgCCAGCGCUUCCGcGGCGc -3' miRNA: 3'- -CGUAuCUGa-------GGUCGCGGAGGUaCUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 83078 | 0.72 | 0.707573 |
Target: 5'- cGCGgcGGCcggcgcuUCCAGCGCCUCCA--GCGc -3' miRNA: 3'- -CGUauCUG-------AGGUCGCGGAGGUacUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 75167 | 0.71 | 0.742841 |
Target: 5'- gGCAUGGACUaCCGcgacgggcgcaugucGCGgaCCUUCAUGGCGg -3' miRNA: 3'- -CGUAUCUGA-GGU---------------CGC--GGAGGUACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 101377 | 0.71 | 0.758577 |
Target: 5'- -----aGCUCCGGCGCCUCCuccACGg -3' miRNA: 3'- cguaucUGAGGUCGCGGAGGuacUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 2279 | 0.71 | 0.768262 |
Target: 5'- cGCcgGGcgGCgccgCCAGCGCCUCCccgGGCa -3' miRNA: 3'- -CGuaUC--UGa---GGUCGCGGAGGua-CUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 121977 | 0.7 | 0.777822 |
Target: 5'- -----cGCUCCAGCGCCgcCCAgcUGGCGg -3' miRNA: 3'- cguaucUGAGGUCGCGGa-GGU--ACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 40569 | 0.7 | 0.777822 |
Target: 5'- -------gUCCAGCGCCUCCAcgaacucgcUGACGu -3' miRNA: 3'- cguaucugAGGUCGCGGAGGU---------ACUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 74562 | 0.7 | 0.793756 |
Target: 5'- gGCGUGGACaUCCAcgcggucgcggaccGCGUCUUCGUGcCGg -3' miRNA: 3'- -CGUAUCUG-AGGU--------------CGCGGAGGUACuGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 115154 | 0.7 | 0.796524 |
Target: 5'- aGCcgGGGgUCgGGCGCCUCC-UGcGCGa -3' miRNA: 3'- -CGuaUCUgAGgUCGCGGAGGuAC-UGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 80579 | 0.7 | 0.796524 |
Target: 5'- ---cAGGCUCCuugaGGCGCCggcCCGUGGCc -3' miRNA: 3'- cguaUCUGAGG----UCGCGGa--GGUACUGc -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 11062 | 0.7 | 0.796524 |
Target: 5'- cGCccAGGCgccgCCAGCGCgUCUAggGACGg -3' miRNA: 3'- -CGuaUCUGa---GGUCGCGgAGGUa-CUGC- -5' |
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23795 | 3' | -53.9 | NC_005261.1 | + | 14719 | 0.7 | 0.805647 |
Target: 5'- gGCcgAGAUUCCAGCGUCacgaCgGUGGCa -3' miRNA: 3'- -CGuaUCUGAGGUCGCGGa---GgUACUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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